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Samir Bhatt
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Journal Articles
- 2024
- [j12]Judith A. Bouman
, Anthony Hauser
Bayesian workflow for time-varying transmission in stratified compartmental infectious disease transmission models. PLoS Comput. Biol. 20(4): 1011575 (2024) - 2023
- [j11]Arash Mehrjou
Pyfectious: An individual-level simulator to discover optimal containment policies for epidemic diseases. PLoS Comput. Biol. 19(1) (2023) - [j10]Shozen Dan
Estimating fine age structure and time trends in human contact patterns from coarse contact data: The Bayesian rate consistency model. PLoS Comput. Biol. 19(6) (2023) - [j9]Rebecca K. Nash
Estimating the epidemic reproduction number from temporally aggregated incidence data: A statistical modelling approach and software tool. PLoS Comput. Biol. 19(8) (2023) - [j8]Xenia Miscouridou, Samir Bhatt, George O. Mohler, Seth R. Flaxman, Swapnil Mishra:
Cox-Hawkes: doubly stochastic spatiotemporal Poisson processes. Trans. Mach. Learn. Res. 2023 (2023) - 2022
- [j7]Tomas Gavenciak
Seasonal variation in SARS-CoV-2 transmission in temperate climates: A Bayesian modelling study in 143 European regions. PLoS Comput. Biol. 18(8) (2022) - [j6]Swapnil Mishra
πVAE: a stochastic process prior for Bayesian deep learning with MCMC. Stat. Comput. 32(6): 96 (2022) - 2021
- [j5]H. Juliette T. Unwin
Using Hawkes Processes to model imported and local malaria cases in near-elimination settings. PLoS Comput. Biol. 17(4) (2021) - 2020
- [j4]Isobel Routledge
Tracking progress towards malaria elimination in China: Individual-level estimates of transmission and its spatiotemporal variation using a diffusion network approach. PLoS Comput. Biol. 16(3) (2020) - 2018
- [j3]Nicholas Graetz, Joseph Friedman, Aaron Osgood-Zimmerman, Roy Burstein, Molly H. Biehl, Chloe Shields, Jonathan F. Mosser
Mapping local variation in educational attainment across Africa. Nat. 555(7694): 48-53 (2018) - 2016
- [j2]Jayna Raghwani
Faster Adaptation in Smaller Populations: Counterintuitive Evolution of HIV during Childhood Infection. PLoS Comput. Biol. 12(1) (2016) - 2013
- [j1]Samir Bhatt
The global distribution and burden of dengue. Nat. 496(7446): 504-507 (2013)
Conference and Workshop Papers
- 2024
- [c3]Elizaveta Semenova
Deep Learning and MCMC with aggVAE for Shifting Administrative Boundaries: Mapping Malaria Prevalence in Kenya. Epi UAI 2024: 13-27 - 2023
- [c2]Giovanni Charles, Timothy M. Wolock, Peter Winskill, Azra C. Ghani, Samir Bhatt, Seth R. Flaxman:
Seq2Seq Surrogates of Epidemic Models to Facilitate Bayesian Inference. AAAI 2023: 14170-14177 - 2021
- [c1]Iwona Hawryluk, Henrique Hoeltgebaum, Swapnil Mishra, Xenia Miscouridou, Ricardo P. Schnekenberg, Charles Whittaker, Michaela A. C. Vollmer, Seth R. Flaxman, Samir Bhatt, Thomas A. Mellan:
Gaussian process nowcasting: application to COVID-19 mortality reporting. UAI 2021: 1258-1268
Informal and Other Publications
- 2024
- [i14]Makkunda Sharma, Fan Yang, Duy-Nhat Vo, Esra Suel, Swapnil Mishra, Samir Bhatt, Oliver Fiala, William Rudgard, Seth R. Flaxman:
KidSat: satellite imagery to map childhood poverty dataset and benchmark. CoRR abs/2407.05986 (2024) - 2023
- [i13]Matthew J. Penn
Phylo2Vec: a vector representation for binary trees. CoRR abs/2304.12693 (2023) - [i12]Nicolas Banholzer, Thomas A. Mellan, H. Juliette T. Unwin, Stefan Feuerriegel, Swapnil Mishra, Samir Bhatt:
A comparison of short-term probabilistic forecasts for the incidence of COVID-19 using mechanistic and statistical time series models. CoRR abs/2305.00933 (2023) - [i11]Elizaveta Semenova
Deep learning and MCMC with aggVAE for shifting administrative boundaries: mapping malaria prevalence in Kenya. CoRR abs/2305.19779 (2023) - [i10]Matthew J. Penn
Leaping through tree space: continuous phylogenetic inference for rooted and unrooted trees. CoRR abs/2306.05739 (2023) - [i9]Matthew J. Penn, Christl A. Donnelly, Samir Bhatt:
Continuous football player tracking from discrete broadcast data. CoRR abs/2311.14642 (2023) - 2022
- [i8]Giovanni Charles, Timothy M. Wolock, Peter Winskill, Azra C. Ghani, Samir Bhatt, Seth R. Flaxman:
Seq2Seq Surrogates of Epidemic Models to Facilitate Bayesian Inference. CoRR abs/2209.09617 (2022) - [i7]Xenia Miscouridou, Samir Bhatt, George O. Mohler, Seth R. Flaxman, Swapnil Mishra:
Cox-Hawkes: doubly stochastic spatiotemporal Poisson processes. CoRR abs/2210.11844 (2022) - [i6]Christian Morgenstern
The interaction of transmission intensity, mortality, and the economy: a retrospective analysis of the COVID-19 pandemic. CoRR abs/2211.00054 (2022) - 2021
- [i5]Elizaveta Semenova, Yidan Xu, Adam Howes, Theo Rashid, Samir Bhatt, Swapnil Mishra, Seth R. Flaxman:
Encoding spatiotemporal priors with VAEs for small-area estimation. CoRR abs/2110.10422 (2021) - 2020
- [i4]Swapnil Mishra
πVAE: Encoding stochastic process priors with variational autoencoders. CoRR abs/2002.06873 (2020) - [i3]Michaela A. C. Vollmer, Ben Glampson, Thomas A. Mellan, Swapnil Mishra
A unified machine learning approach to time series forecasting applied to demand at emergency departments. CoRR abs/2007.06566 (2020) - 2019
- [i2]Philip Milton, Emanuele Giorgi, Samir Bhatt:
Spatial Analysis Made Easy with Linear Regression and Kernels. CoRR abs/1902.08679 (2019) - 2018
- [i1]Lars Lorch, Abir De, Samir Bhatt, William Trouleau, Utkarsh Upadhyay, Manuel Gomez-Rodriguez:
Stochastic Optimal Control of Epidemic Processes in Networks. CoRR abs/1810.13043 (2018)
Coauthor Index
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