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Alexey A. Gurevich
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2020 – today
- 2023
- [j11]Alla Mikheenko, Vladislav Saveliev, Pascal Hirsch, Alexey A. Gurevich:
WebQUAST: online evaluation of genome assemblies. Nucleic Acids Res. 51(W1): 601-606 (2023) - 2020
- [j10]Alla Mikheenko, Andrey V. Bzikadze, Alexey A. Gurevich, Karen H. Miga, Pavel A. Pevzner:
TandemTools: mapping long reads and assessing/improving assembly quality in extra-long tandem repeats. Bioinform. 36(Supplement-1): i75-i83 (2020)
2010 – 2019
- 2019
- [j9]Azat M. Tagirdzhanov, Alexander Shlemov, Alexey A. Gurevich:
NPS: scoring and evaluating the statistical significance of peptidic natural product-spectrum matches. Bioinform. 35(14): i315-i323 (2019) - [c2]Bahar Behsaz, Hosein Mohimani, Alexey A. Gurevich, Andrey D. Prjibelski, Mark F. Fisher, Larry Smarr, Pieter C. Dorrestein, Joshua S. Mylne, Pavel A. Pevzner:
De Novo Peptide Sequencing Reveals a Vast Cyclopeptidome in Human Gut and Other Environments. RECOMB 2019: 289-291 - 2018
- [j8]Alla Mikheenko, Andrey D. Prjibelski, Vladislav Saveliev, Dmitry Antipov, Alexey A. Gurevich:
Versatile genome assembly evaluation with QUAST-LG. Bioinform. 34(13): i142-i150 (2018) - 2016
- [j7]Alla Mikheenko, Vladislav Saveliev, Alexey A. Gurevich:
MetaQUAST: evaluation of metagenome assemblies. Bioinform. 32(7): 1088-1090 (2016) - [j6]Alla Mikheenko, Gleb Valin, Andrey D. Prjibelski, Vladislav Saveliev, Alexey A. Gurevich:
Icarus: visualizer for de novo assembly evaluation. Bioinform. 32(21): 3321-3323 (2016) - 2015
- [j5]Irina Vasilinetc, Andrey D. Prjibelski, Alexey A. Gurevich, Anton I. Korobeynikov, Pavel A. Pevzner:
Assembling short reads from jumping libraries with large insert sizes. Bioinform. 31(20): 3262-3268 (2015) - 2014
- [j4]Andrey D. Prjibelski, Irina Vasilinetc, Anton Bankevich, Alexey A. Gurevich, Tatiana Krivosheeva, Sergey Nurk, Son K. Pham, Anton I. Korobeynikov, Alla L. Lapidus, Pavel A. Pevzner:
ExSPAnder: a universal repeat resolver for DNA fragment assembly. Bioinform. 30(12): 293-301 (2014) - 2013
- [j3]Alexey A. Gurevich, Vladislav Saveliev, Nikolay Vyahhi, Glenn Tesler:
QUAST: quality assessment tool for genome assemblies. Bioinform. 29(8): 1072-1075 (2013) - [j2]Sergey Nurk, Anton Bankevich, Dmitry Antipov, Alexey A. Gurevich, Anton I. Korobeynikov, Alla L. Lapidus, Andrey D. Prjibelski, Alex Pyshkin, Alexander Sirotkin, Yakov Sirotkin, Ramunas Stepanauskas, Scott R. Clingenpeel, Tanja Woyke, Jeffrey S. McLean, Roger Lasken, Glenn Tesler, Max A. Alekseyev, Pavel A. Pevzner:
Assembling Single-Cell Genomes and Mini-Metagenomes From Chimeric MDA Products. J. Comput. Biol. 20(10): 714-737 (2013) - [c1]Sergey Nurk, Anton Bankevich, Dmitry Antipov, Alexey A. Gurevich, Anton I. Korobeynikov, Alla L. Lapidus, Andrey D. Prjibelsky, Alex Pyshkin, Alexander Sirotkin, Yakov Sirotkin, Ramunas Stepanauskas, Jeffrey S. McLean, Roger Lasken, Scott R. Clingenpeel, Tanja Woyke, Glenn Tesler, Max A. Alekseyev, Pavel A. Pevzner:
Assembling Genomes and Mini-metagenomes from Highly Chimeric Reads. RECOMB 2013: 158-170 - 2012
- [j1]Anton Bankevich, Sergey Nurk, Dmitry Antipov, Alexey A. Gurevich, Mikhail Dvorkin, Alexander S. Kulikov, Valery M. Lesin, Sergey I. Nikolenko, Son K. Pham, Andrey D. Prjibelski, Alex Pyshkin, Alexander Sirotkin, Nikolay Vyahhi, Glenn Tesler, Max A. Alekseyev, Pavel A. Pevzner:
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing. J. Comput. Biol. 19(5): 455-477 (2012)
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