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Sean R. Davis
Person information
- affiliation: University of Colorado Anschutz Medical Campus, School of Medicine, Aurora, CO, USA
- affiliation: National Cancer Institute, Bethesda, MD, USA
Other persons with the same name
- Sean Davis — disambiguation page
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Journal Articles
- 2022
- [j10]Arkarachai Fungtammasan
, Alexandra Lee
Ten simple rules for large-scale data processing. PLoS Comput. Biol. 18(2) (2022) - 2021
- [j9]Ludwig Geistlinger, Gergely Csaba, Mara Santarelli, Marcel Ramos
Toward a gold standard for benchmarking gene set enrichment analysis. Briefings Bioinform. 22(1): 545-556 (2021) - 2016
- [j8]Lavanya Kannan, Marcel Ramos
Public data and open source tools for multi-assay genomic investigation of disease. Briefings Bioinform. 17(4): 603-615 (2016) - [j7]Hongen Zhang, Paul S. Meltzer, Sean R. Davis:
caOmicsV: an R package for visualizing multidimensional cancer genomic data. BMC Bioinform. 17: 141 (2016) - 2013
- [j6]Yuelin Zhu, Robert M. Stephens, Paul S. Meltzer, Sean R. Davis
SRAdb: query and use public next-generation sequencing data from within R. BMC Bioinform. 14: 19 (2013) - [j5]Hongen Zhang, Paul S. Meltzer, Sean Davis
RCircos: an R package for Circos 2D track plots. BMC Bioinform. 14: 244 (2013) - [j4]Tanya Barrett, Stephen E. Wilhite, Pierre Ledoux, Carlos Evangelista, Irene F. Kim, Maxim Tomashevsky, Kimberly A. Marshall, Katherine H. Phillippy, Patti M. Sherman, Michelle Holko, Andrey Yefanov, Hyeseung Lee, Naigong Zhang, Cynthia L. Robertson, Nadezhda Serova, Sean R. Davis
NCBI GEO: archive for functional genomics data sets - update. Nucleic Acids Res. 41(Database-Issue): 991-995 (2013) - 2008
- [j3]Yuelin Zhu, Sean R. Davis
GEOmetadb: powerful alternative search engine for the Gene Expression Omnibus. Bioinform. 24(23): 2798-2800 (2008) - 2007
- [j2]Sean R. Davis, Paul S. Meltzer:
GEOquery: a bridge between the Gene Expression Omnibus (GEO) and BioConductor. Bioinform. 23(14): 1846-1847 (2007) - 2005
- [j1]Steffen Durinck, Yves Moreau
BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis. Bioinform. 21(16): 3439-3440 (2005)
Conference and Workshop Papers
- 2004
- [c1]Paul S. Meltzer, Sean R. Davis, Kristin Baird, Yidong Chen:
Are We There Yet? Genomic Profiling and Mechanism in Cancer Research. CSB 2004: 6
Editorship
- 2016
- [e1]Ewy A. Mathé, Sean R. Davis:
Statistical Genomics - Methods and Protocols. Methods in Molecular Biology 1418, Springer 2016, ISBN 978-1-4939-3576-5 [contents]
Informal and Other Publications
- 2024
- [i4]Jenny Drnevich, Frederick J. Tan, Fabricio Almeida-Silva, Robert Castelo, Aedín C. Culhane, Sean Davis, Maria A. Doyle, Susan Holmes, Leo Lahti, Alexandru Mahmoud, Kozo Nishida, Marcel Ramos, Kevin C. Rue-Albrecht, David J. H. Shih, Laurent Gatto, Charlotte Soneson:
Learning and teaching biological data science in the Bioconductor community. CoRR abs/2410.01351 (2024) - 2019
- [i3]Shweta Gopaulakrishnan, Samuela Pollack, BJ Stubbs, Hervé Pagès, John Readey, Sean Davis, Levi Waldron
restfulSE: A semantically rich interface for cloud-scale genomics with Bioconductor. F1000Research 8: 21 (2019) - [i2]Shian Su
BiocPkgTools: Toolkit for mining the Bioconductor package ecosystem. F1000Research 8: 752 (2019) - 2018
- [i1]Sean Davis
Orchestrating a community-developed computational workshop and accompanying training materials. F1000Research 7: 1656 (2018)
Coauthor Index
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