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Neuroinformatics, Volume 13

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Volume 13, Number 1, January 2015

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  - journals/ni/SoraniYSMFCDGLMMMMOPVY15
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Marco Sorani, John K. Yue, Sourabh Sharma, Geoffrey T. Manley, Adam R. Ferguson, Shelly R. Cooper, Kristen Dams-O'Connor, Wayne A. Gordon, Hester F. Lingsma, Andrew I. R. Maas, David K. Menon, Diane Morabito, Pratik Mukherjee, David O. Okonkwo, Ava M. Puccio, Alex B. Valadka, Esther L. Yuh:
Genetic Data Sharing and Privacy. 1-6
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Frank M. Skidmore, Phoebe G. Spetsieris, Thomas Anthony, Gary R. Cutter, Karen M. von Deneen, Yuliang Liu, Keith D. White, Kenneth M. Heilman, Joanna Myers, David G. Standaert, Adrienne C. Lahti, David Eidelberg, Aziz M. Ulug:
A Full-Brain, Bootstrapped Analysis of Diffusion Tensor Imaging Robustly Differentiates Parkinson Disease from Healthy Controls. 7-18
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Karsten Tabelow, Siawoosh Mohammadi, Nikolaus Weiskopf, Jörg Polzehl:
POAS4SPM: A Toolbox for SPM to Denoise Diffusion MRI Data. 19-29
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Mert R. Sabuncu, Ender Konukoglu:
Clinical Prediction from Structural Brain MRI Scans: A Large-Scale Empirical Study. 31-46
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Yanbin Lu, Lawrence Carin, Ronald R. Coifman, William Shain, Badrinath Roysam:
Quantitative Arbor Analytics: Unsupervised Harmonic Co-Clustering of Populations of Brain Cell Arbors Based on L-Measure. 47-63
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Kai Yan Eugene Leung, Fedde van der Lijn, Henri A. Vrooman, Miriam C. J. M. Sturkenboom, Wiro J. Niessen:
IT Infrastructure to Support the Secondary Use of Routinely Acquired Clinical Imaging Data for Research. 65-81
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Anne Jorstad, Biagio Nigro, Corrado Calì, Marta Wawrzyniak, Pascal Fua, Graham Knott:
NeuroMorph: A Toolset for the Morphometric Analysis and Visualization of 3D Models Derived from Electron Microscopy Image Stacks. 83-92
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Bénédicte Batrancourt, Michel Dojat, Bernard Gibaud, Gilles Kassel:
A Multilayer Ontology of Instruments for Neurological, Behavioral and Cognitive Assessments. 93-110
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Volodymyr Shcherbatyy, James P. Carson, Murat Yaylaoglu, Katharina Jäckle, Frauke Grabbe, Maren Brockmeyer, Halenur Yavuz, Gregor Eichele:
A Digital Atlas of Ion Channel Expression Patterns in the Two-Week-Old Rat Brain. 111-125
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Sumit Nanda, M. Mowafak Allaham, Maurizio Bergamino, Sridevi Polavaram, Rubén Armañanzas, Giorgio A. Ascoli, Ruchi Parekh:
Doubling up on the Fly: NeuroMorpho.Org Meets Big Data. 127-129

Volume 13, Number 2, April 2015

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Erik De Schutter:
The Missing Piece of the Puzzle: Neuroinformatics at the Bench. 131-132
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Vanderson Dill, Alexandre Rosa Franco, Márcio Sarroglia Pinho:
Automated Methods for Hippocampus Segmentation: the Evolution and a Review of the State of the Art. 133-150
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Omar Gutierrez-Arenas:
Handling and Analyzing Meshed Rendering of Segmented Structures From 3D Image Stacks in Blender. 151-152
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Zhi Zhou, Staci A. Sorensen, Hongkui Zeng, Michael Hawrylycz, Hanchuan Peng:
Adaptive Image Enhancement for Tracing 3D Morphologies of Neurons and Brain Vasculatures. 153-166
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Jan Kubanek, Gerwin Schalk:
NeuralAct: A Tool to Visualize Electrocortical (ECoG) Activity on a Three-Dimensional Model of the Cortex. 167-174
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Alejandro Mottini, Xavier Descombes, Florence Besse:
From Curves to Trees: A Tree-like Shapes Distance Using the Elastic Shape Analysis Framework. 175-191
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Bojan Mihaljevic, Ruth Benavides-Piccione, Concha Bielza, Javier DeFelipe, Pedro Larrañaga:
Bayesian Network Classifiers for Categorizing Cortical GABAergic Interneurons. 193-208
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Nicholas J. Tustison, K. L. Shrinidhi, Max Wintermark, Christopher R. Durst, Benjamin M. Kandel, James C. Gee, Murray C. Grossman, Brian B. Avants:
Optimal Symmetric Multimodal Templates and Concatenated Random Forests for Supervised Brain Tumor Segmentation (Simplified) with ANTsR. 209-225
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David Jiménez, Demetrio Labate, Ioannis A. Kakadiaris, Manos Papadakis:
Improved Automatic Centerline Tracing for Dendritic and Axonal Structures. 227-244
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Francisco Rosales, Antonio García Dopico, Ricardo Bajo, Angel Nevado:
An Efficient Implementation of the Synchronization Likelihood Algorithm for Functional Connectivity. 245-258

Volume 13, Number 3, July 2015

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Hanchuan Peng, Erik Meijering, Giorgio A. Ascoli:
From DIADEM to BigNeuron. 259-260
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  - journals/ni/CaligiuriPARQC15
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Maria Eugenia Caligiuri, Paolo Perrotta, Antonio Augimeri, Federico Rocca, Aldo Quattrone, Andrea Cherubini:
Automatic Detection of White Matter Hyperintensities in Healthy Aging and Pathology Using Magnetic Resonance Imaging: A Review. 261-276
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Heung-Il Suk, Chong-Yaw Wee, Seong-Whan Lee, Dinggang Shen:
Supervised Discriminative Group Sparse Representation for Mild Cognitive Impairment Diagnosis. 277-295
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Alberto Santamaría-Pang, Paul Hernandez-Herrera, Manos Papadakis, Peter Saggau, Ioannis A. Kakadiaris:
Automatic Morphological Reconstruction of Neurons from Multiphoton and Confocal Microscopy Images Using 3D Tubular Models. 297-320
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Jie Shi, Olivier Collignon, Liang Xu, Gang Wang, Yue Kang, Franco Leporé, Yi Lao, Anand A. Joshi, Natasha Leporé, Yalin Wang:
Impact of Early and Late Visual Deprivation on the Structure of the Corpus Callosum: A Study Combining Thickness Profile with Surface Tensor-Based Morphometry. 321-336
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Sanne P. Roels, Beatrijs Moerkerke, Tom Loeys:
Bootstrapping fMRI Data: Dealing with Misspecification. 337-352
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Rembrandt Bakker, Paul H. E. Tiesinga, Rolf Kötter:
The Scalable Brain Atlas: Instant Web-Based Access to Public Brain Atlases and Related Content. 353-366
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Chuyang Ye, Zhen Yang, Sarah H. Ying, Jerry L. Prince:
Segmentation of the Cerebellar Peduncles Using a Random Forest Classifier and a Multi-object Geometric Deformable Model: Application to Spinocerebellar Ataxia Type 6. 367-381
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David N. Kennedy, Christian Haselgrove, Jon Riehl, Nina Preuss, Robert Buccigrossi:
The Three NITRCs: A Guide to Neuroimaging Neuroinformatics Resources. 383-386

Volume 13, Number 4, October 2015

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David N. Kennedy:
The Dark Matter of the Bibliome. 387-389
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Diego Salas-Gonzalez, Juan Manuel Górriz, Javier Ramírez, Ignacio Álvarez Illán, Pablo Padilla, Francisco Jesús Martínez-Murcia, Elmar Wolfgang Lang:
Building a FP-CIT SPECT Brain Template Using a Posterization Approach. 391-402
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Torbjørn V. Ness, Chaitanya Chintaluri, Jan Potworowski, Szymon Leski, Helena T. Glabska, Daniel K. Wójcik, Gaute T. Einevoll:
Modelling and Analysis of Electrical Potentials Recorded in Microelectrode Arrays (MEAs). 403-426
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Saman Sargolzaei, Arman Sargolzaei, Mercedes Cabrerizo, Gang Chen, Mohammed Goryawala, Alberto Pinzon-Ardila, Sergio M. Gonzalez-Arias, Malek Adjouadi:
Estimating Intracranial Volume in Brain Research: An Evaluation of Methods. 427-441
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Timothy Smafield, Venkata Pasupuleti, Kamal Sharma, Richard L. Huganir, Bing Ye, Jie Zhou:
Automatic Dendritic Length Quantification for High Throughput Screening of Mature Neurons. 443-458
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Robert A. McDougal, Thomas M. Morse, Michael L. Hines, Gordon M. Shepherd:
ModelView for ModelDB: Online Presentation of Model Structure. 459-470
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Bastian Venthur, Sven Dähne, Johannes Höhne, Hendrik Heller, Benjamin Blankertz:
Wyrm: A Brain-Computer Interface Toolbox in Python. 471-486
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Yinan Wan, Fuhui Long, Lei Qu, Hang Xiao, Michael Hawrylycz, Eugene W. Myers, Hanchuan Peng:
BlastNeuron for Automated Comparison, Retrieval and Clustering of 3D Neuron Morphologies. 487-499
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Edward Herskovits, L. Elliot Hong, Peter V. Kochunov, Hemalatha Sampath, Rong Chen:
Edge-Centered DTI Connectivity Analysis: Application to Schizophrenia. 501-509

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