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Frontiers in Neuroinformatics, Volume 3
Volume 3, 2009
- Michael L. Hines, Andrew P. Davison
, Eilif B. Müller
NEURON and Python. 1 - Landon T. Detwiler, Dan Suciu
Distributed XQuery-based integration and visualization of multimodality brain mapping data. 2 - Michael Hanke
PyMVPA: a unifying approach to the analysis of neuroscientific data. 3 - Robin A. A. Ince, Rasmus S. Petersen
Python for information theoretic analysis of neural data. 4 - Peter Jurica, Cees van Leeuwen
OMPC: an open-source MATLAB®-to-Python compiler. 5 - Charles W. Fox, Mark D. Humphries
Technical integration of hippocampus, basal ganglia and physical models for spatial navigation. 6 - Terrence C. Stewart, Bryan P. Tripp, Chris Eliasmith:
Python scripting in the Nengo simulator. 7 - James A. Bednar:
Topographica: building and analyzing map-level simulations from Python, C/C++, MATLAB, NEST, or NEURON components. 8 - Andre D. Gouws
DataViewer3D: An open-source, cross-platform multi-modal neuroimaging data visualization tool. 9 - James Gonzalo King, Michael L. Hines, Sean L. Hill, Philip H. Goodman, Henry Markram, Felix Schürmann:
A component-based extension framework for large-scale parallel simulations in NEURON. 10 - Dejan Pecevski, Thomas Natschläger, Klaus Schuch:
PCSIM: a parallel simulation environment for neural circuits fully integrated with Python. 11 - Gary Strangman
Near-infrared neuroimaging with NinPy. 12 - Ryoji Yanashima, Noriyuki Kitagawa, Yoshiya Matsubara, Robert Weatheritt, Kotaro Oka, Shinichi Kikuchi, Masaru Tomita, Shun Ishizaki:
Network features and pathway analyses of a signal transduction cascade. 13 - Samuel Garcia
OpenElectrophy: an electrophysiological data- and analysis-sharing framework. 14 - Stefan Wils, Erik De Schutter:
STEPS: modeling and simulating complex reaction-diffusion systems with Python. 15 - Rich Drewes, Quan Zou
Brainlab: a Python toolkit to aid in the design, simulation, and analysis of spiking neural networks with the NeoCortical Simulator. 16 - Daniel Brüderle, Eric Müller, Andrew P. Davison
Establishing a novel modeling tool: a python-based interface for a neuromorphic hardware system. 17 - Vesa Kiviniemi, Jukka J. Remes
Mapping transient hyperventilation induced alterations with estimates of the multi-scale dynamics of BOLD signal. 18 - Jason M. Lohrey, Neil E. B. Killeen, Gary F. Egan
An integrated object model and method framework for subject-centric e-Research applications. 19 - Stefan J. Kiebel
Perception and hierarchical dynamics. 20 - Hubert Eichner, Tobias Klug, Alexander Borst:
Neural simulations on multi-core architectures. 21 - Ivo D. Dinov
Efficient, distributed and interactive neuroimaging data analysis using the LONI pipeline. 22 - Angela R. Laird
ALE meta-analysis workflows via the BrainMap database: progress towards a probabilistic functional brain atlas. 23 - Francisco Aparecido Rodrigues, Luciano da F. Costa:
Signal propagation in cortical networks: a digital signal processing approach. 24 - Daniel Mietchen
Computational morphometry for detecting changes in brain structure due to development, aging, learning, disease and evolution. 25 - Finn Årup Nielsen
Visualizing data mining results with the Brede tools. 26 - Cinly Ooi, Edward T. Bullmore
CamBAfx: workflow design, implementation and application for neuroimaging. 27 - Marc-Thorsten Hütt, Annick Lesne
Interplay between topology and dynamics in excitation patterns on hierarchical graphs. 28 - Leon French, Suzanne Lane, Lydia Xu, Paul Pavlidis
Automated recognition of brain region mentions in neuroscience literature. 29 - David B. Keator
Derived data storage and exchange workflow for large-scale neuroimaging analyses on the BIRN grid. 30 - John D. Van Horn, Arthur W. Toga:
Neuroimaging workflow design and data-mining: a Frontiers in Neuroinformatics special issue. 31 - Meron Gurkiewicz, Dana Iron, Izhar Bar-Gad, Alon Korngreen
Rise of the appendage. 32 - Sergi G. Costafreda
Pooling fMRI data: meta-analysis, mega-analysis and multi-center studies. 33 - Sarah Kenny, Michael Andric, Steven M. Boker, Michael C. Neale, Michael Wilde, Steven L. Small
Parallel workflows for data-driven structural equation modeling in functional neuroimaging. 34 - Xi Cheng, Ricardo Pizarro
Bio-Swarm-Pipeline: a light-weight, extensible batch processing system for efficient biomedical data processing. 35 - Henry Jeremy Bockholt, Mark Scully, William Courtney, Srinivas Rachakonda, Adam Scott, Arvind Caprihan, Jill Fries, Ravi Kalyanam, Judith M. Segall, Raul de la Garza, Susan R. Lane, Vince D. Calhoun
Mining the mind research network: a novel framework for exploring large scale, heterogeneous translational neuroscience research data sources. 36 - David Meunier
Hierarchical modularity in human brain functional networks. 37 - Shantanu H. Joshi, John D. Van Horn, Arthur W. Toga:
Interactive exploration of neuroanatomical meta-spaces. 38 - Eilen Nordlie, Hans Ekkehard Plesser:
Visualizing neuronal network connectivity with connectivity pattern tables. 39
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