Computer Methods and Programs in Biomedicine, Volume 225

Volume 225, October 2022

Section II: Biomedical signal and image processing methods

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  Defu Qiu, Yuhu Cheng, Xuesong Wang:
  Improved generative adversarial network for retinal image super-resolution. 106995
• 
  Chen Geng, Meng Chen, Ruoyu Di, Dongdong Wang, Liqin Yang, Wei Xia, Yuxin Li, Daoying Geng:
  An automatic detection method of cerebral aneurysms in time-of-flight magnetic resonance angiography images based on attention 3D U-Net. 106998

Section III: Modelling & Simulation

• 
  Beichen Shi, Martina Barzan, Azadeh Nasseri, Christopher P. Carty, David G. Lloyd, Giorgio Davico, Jayishni N. Maharaj, Laura E. Diamond, David John Saxby:
  Development of predictive statistical shape models for paediatric lower limb bones. 107002

Section II: Biomedical signal and image processing methods

• 
  Ningbo Yu, Yang Yu, Jianeng Lin, Yuchen Yang, Jingchao Wu, Siquan Liang, Jialing Wu, Jianda Han:
  A non-contact system for intraoperative quantitative assessment of bradykinesia in deep brain stimulation surgery. 107005

Section III: Modelling & Simulation

• 
  Ramtin Gharleghi, Arcot Sowmya, Susann Beier:
  Transient wall shear stress estimation in coronary bifurcations using convolutional neural networks. 107013

Section II: Biomedical signal and image processing methods

• 
  Ramtin Gharleghi, Nanway Chen, Arcot Sowmya, Susann Beier:
  Towards automated coronary artery segmentation: A systematic review. 107015
• 
  Enrico Martini, Michele Boldo, Stefano Aldegheri, Nicola Valè, Mirko Filippetti, Nicola Smania, Matteo Bertucco, Alessandro Picelli, Nicola Bombieri:
  Enabling Gait Analysis in the Telemedicine Practice through Portable and Accurate 3D Human Pose Estimation. 107016

Section V: Others

• 
  Emmanuel Moebel, Charles Kervrann:
  Towards unsupervised classification of macromolecular complexes in cryo electron tomography: Challenges and opportunities. 107017

Section II: Biomedical signal and image processing methods

• 
  Daniel Romero, Dolores Blanco-Almazán, Willemijn Groenendaal, Lien Lijnen, Christophe Smeets, David Ruttens, Francky Catthoor, Raimon Jané:
  Predicting 6-minute walking test outcomes in patients with chronic obstructive pulmonary disease without physical performance measures. 107020
• 
  Matheus Viana da Silva, Julie Ouellette, Baptiste Lacoste, Cesar H. Comin:
  An analysis of the influence of transfer learning when measuring the tortuosity of blood vessels. 107021

Section V: Others

• 
  Yi-Ting Lin, Chao-Yu Chu, Kuo-Sheng Hung, Chihua Lu, Edward M. Bednarczyk, Hsiang-Yin Chen:
  Can machine learning predict pharmacotherapy outcomes? An application study in osteoporosis. 107028
• 
  Yongwon Cho, Yeo Eun Han, Min Ju Kim, Beom Jin Park, Ki Choon Sim, Deuk Jae Sung, Na Yeon Han, Yang Shin Park:
  Computer-aided hepatocellular carcinoma detection on the hepatobiliary phase of gadoxetic acid-enhanced magnetic resonance imaging using a convolutional neural network: Feasibility evaluation with multi-sequence data. 107032

Section IV: Classification and interpretation

• 
  Zhaohong Sun, Xudong Lu, Huilong Duan, Haomin Li:
  Deep Dynamic Patient Similarity Analysis: Model Development and Validation in ICU. 107033

Section III: Modelling & Simulation

• 
  Bao Li, Tao Liu, Jincheng Liu, Youjun Liu, Boqiang Cao, Xi Zhao, Wenxin Wang, Mengchao Shi, Liyuan Zhang, Ke Xu, Mingyan Chen, Chuanqi Wen, Mingzi Zhang:
  Reliability of using generic flow conditions to quantify aneurysmal haemodynamics: A comparison against simulations incorporating boundary conditions measured in vivo. 107034

Section V: Others

• 
  Vittorio Pipoli, Mattia Cappelli, Alessandro Palladini, Carlo Peluso, Marta Lovino, Elisa Ficarra:
  Predicting gene expression levels from DNA sequences and post-transcriptional information with transformers. 107035
• 
  Wenjia Peng, Wei Wu, Jingyang Zhang, Hongzhi Xie, Shuyang Zhang, Lixu Gu:
  An automatic framework for estimating the pose of the catheter distal section using a coarse-to-fine network. 107036

Section II: Biomedical signal and image processing methods

• 
  Luuk van Knippenberg, Ruud J. G. van Sloun, Massimo Mischi, Joerik de Ruijter, Richard G. P. Lopata, R. Arthur Bouwman:
  Unsupervised domain adaptation method for segmenting cross-sectional CCA images. 107037

Diagnostics and Decision Support

• 
  Ying Zou, Yan Shi, Fang Sun, Jihua Liu, Yu Guo, Huanlei Zhang, Xiudi Lu, Yan Gong, Shuang Xia:
  Extreme gradient boosting model to assess risk of central cervical lymph node metastasis in patients with papillary thyroid carcinoma: Individual prediction using SHapley Additive exPlanations. 107038

Section V: Others

• 
  José-Jesús Fernández, Antonio Martínez-Sánchez:
  Computational methods for three-dimensional electron microscopy (3DEM). 107039

Section II: Biomedical signal and image processing methods

• 
  Massimo Salvi, Francesco Branciforti, Federica Veronese, Elisa Zavattaro, Vanessa Tarantino, Paola Savoia, Kristen M. Meiburger:
  DermoCC-GAN: A new approach for standardizing dermatological images using generative adversarial networks. 107040

Section IV: Classification and interpretation

• 
  Yuhan Ding, Weifang Xie, Kelvin Kian Loong Wong, Zhifang Liao:
  Classification of myocardial fibrosis in DE-MRI based on semi-supervised semantic segmentation and dual attention mechanism. 107041
• 
  Rick van Veen, Sanne K. Meles, Remco J. Renken, Fransje E. Reesink, Wolfgang H. Oertel, Annette Janzen, Gert-Jan de Vries, Klaus Leonard Leenders, Michael Biehl:
  FDG-PET combined with learning vector quantization allows classification of neurodegenerative diseases and reveals the trajectory of idiopathic REM sleep behavior disorder. 107042

Section III: Modelling & Simulation

• 
  Rui Shen, Xinyu Tong, Dongye Li, Zihan Ning, Hualu Han, Yongjun Han, Dandan Yang, Chenlin Du, Tao Wang, Jingli Cao, Yilan Xu, Ran Huo, Huiyu Qiao, Xihai Zhao:
  Slice-based and time-specific hemodynamic measurements discriminate carotid artery vulnerable atherosclerotic plaques. 107050
• 
  Nikolas K. Knowles, Nathan Neeteson, Steven K. Boyd:
  High performance multi-platform computing for large-scale image-based finite element modeling of bone. 107051

Section IV: Classification and interpretation

• 
  Jinhong Wang, Guiqing Chen, Shiqiang Chen, Alex Noel Joseph Raj, Zhemin Zhuang, Lei Xie, Shuhua Ma:
  Ultrasonic breast tumor extraction based on adversarial mechanism and active contour. 107052
• 
  Yunfeng Chen, Yalan Lin, Xiaodie Xu, Jinzhen Ding, Chuzhao Li, Yiming Zeng, Weili Liu, Weifang Xie, Jianlong Huang:
  Classification of lungs infected COVID-19 images based on inception-ResNet. 107053

Section III: Modelling & Simulation

• 
  Bong Ju Chun, In Gwun Jang:
  Framework of sampling the subject-specific static loads from the gait cycle of interindividual variation. 107054

Section II: Biomedical signal and image processing methods

• 
  Giuseppe Pio Cannata, Lucia Migliorelli, Adriano Mancini, Emanuele Frontoni, Rocco Pietrini, Sara Moccia:
  Generating depth images of preterm infants in given poses using GANs. 107057
• 
  Andrea Bandini, Sana Smaoui, Catriona M. Steele:
  Automated pharyngeal phase detection and bolus localization in videofluoroscopic swallowing study: Killing two birds with one stone? 107058

Section III: Modelling & Simulation

• 
  Xinpei Li, Yanen Wang, Bo Zhang, Haozhe Yang, Ray Tahir Mushtaq, Minyan Liu, Chengwei Bao, Yikai Shi, Zhuojing Luo, Weihong Zhang:
  The design and evaluation of bionic porous bone scaffolds in fluid flow characteristics and mechanical properties. 107059
• 
  Wenge Que, Chuang Han, Xiliang Zhao, Li Shi:
  An ECG generative model of myocardial infarction. 107062
• 
  Shasha Yeung, Hyun Kyung Kim, Alex Carleton, Jacob T. Munro, D. Ferguson, Andrew Paul Monk, Ju Zhang, Thor F. Besier, J. Fernàndez:
  Integrating wearables and modelling for monitoring rehabilitation following total knee joint replacement. 107063

Section V: Others

• 
  Hoang Long Le, Hong Gee Roh, Hyun Jeong Kim, Jin Tae Kwak:
  A 3D Multi-task Regression and Ordinal Regression Deep Neural Network for Collateral Imaging from Dynamic Susceptibility Contrast-Enhanced MR perfusion in Acute Ischemic Stroke. 107071

Section III: Modelling & Simulation

• 
  Lingtong Bu, Xiang Wei, Jisi Zheng, Yating Qiu, Chi Yang:
  Evaluation of internal fixation techniques for extracapsular fracture: A finite element analysis and comparison. 107072

Section IV: Classification and interpretation

• 
  Weimin Chen, Hongyuan Huang, Jing Huang, Ke Wang, Hua Qin, Kelvin Kian Loong Wong:
  Deep learning-based medical image segmentation of the aorta using XR-MSF-U-Net. 107073

Section II: Biomedical signal and image processing methods

• 
  Robert Rockenfeller, Andreas Müller:
  Augmenting the Cobb angle: Three-dimensional analysis of whole spine shapes using Bézier curves. 107075

Section IV: Classification and interpretation

• 
  Xiaoliang Jiang, Jinyun Jiang, Ban Wang, Jianping Yu, Jun Wang:
  SEACU-Net: Attentive ConvLSTM U-Net with squeeze-and-excitation layer for skin lesion segmentation. 107076

Section III: Modelling & Simulation

• 
  Joris Heyse, Barbara Depreeuw, Tom Van Daele, Tine Daeseleire, Femke Ongenae, Femke De Backere, Filip De Turck:
  An adaptation algorithm for personalised virtual reality exposure therapy. 107077
• 
  DaiZhu Yuan, ZhanYu Wu, Siwei Luo, Yuhu Zhou, Jianxiang Teng, Chuan Ye:
  Improve biomechanical stability using intramedullary nails with femoral neck protection in femoral shaft fractures. 107078

Diagnostics and Decision Support

• 
  Joshua Emakhu, Leslie Monplaisir, Celestine C. Aguwa, Suzan Arslanturk, Sara Masoud, Hashem Nassereddine, Mohamed S. Hamam, Joseph Miller:
  Acute coronary syndrome prediction in emergency care: A machine learning approach. 107080

Section V: Others

• 
  Aniek F. Markus, Katia M. C. Verhamme, Jan A. Kors, Peter R. Rijnbeek:
  TreatmentPatterns: An R package to facilitate the standardized development and analysis of treatment patterns across disease domains. 107081
• 
  Xiao Jiang, Lishan Qiao, Renato De Leone, Dinggang Shen:
  Joint selection of brain network nodes and edges for MCI identification. 107082

Section II: Biomedical signal and image processing methods

• 
  Eva Milara, Adolfo Gómez-Grande, Sebastián Tomás-Soler, Alexander P. Seiffert, Rafael Alonso, Enrique J. Gómez, Joaquín Martínez-López, Patricia Sánchez-González:
  Bone marrow segmentation and radiomics analysis of [¹⁸F]FDG PET/CT images for measurable residual disease assessment in multiple myeloma. 107083
• 
  Marcel Frueh, Thomas Küstner, Marcel Nachbar, Daniela Thorwarth, Andreas Schilling, Sergios Gatidis:
  Self-supervised learning for automated anatomical tracking in medical image data with minimal human labeling effort. 107085
• 
  Gongping Chen, Yu Dai, Jianxun Zhang:
  C-Net: Cascaded convolutional neural network with global guidance and refinement residuals for breast ultrasound images segmentation. 107086
• 
  Junhong Xiang, Wanrong Yang, Hua Zhang, Fangyu Zhu, Shanshan Pu, Rui Li, Che Wang, Zhonghong Yan, Wang Li:
  Digital signal extraction approach for cardiotocography image. 107089
• 
  Moogyeong Kim, Wonzoo Chung:
  A cascade of preconditioned conjugate gradient networks for accelerated magnetic resonance imaging. 107090

Section IV: Classification and interpretation

• 
  Tingyi Tian, Le Wang, Man Luo, Yiping Sun, Xiaoyan Liu:
  ResNet-50 based technique for EEG image characterization due to varying environmental stimuli. 107092
• 
  Yan Li, Yongchang Liu, Zhen Hong, Ying Wang, Xiuling Lu:
  Combining machine learning with radiomics features in predicting outcomes after mechanical thrombectomy in patients with acute ischemic stroke. 107093

Section III: Modelling & Simulation

• 
  Zhilong Qin, Yanbin Shi, Jinwei Qiao, Guimei Lin, Bingtao Tang, Xuelin Li, Jing Zhang:
  CFD simulation of porous microsphere particles in the airways of pulmonary fibrosis. 107094

Section II: Biomedical signal and image processing methods

• 
  Jingjiao Lou, Jiawen Xu, Yuyan Zhang, Yuhong Sun, Aiju Fang, Jixuan Liu, Luis A. J. Mur, Bing Ji:
  PPsNet: An improved deep learning model for microsatellite instability high prediction in colorectal cancer from whole slide images. 107095

Section IV: Classification and interpretation

• 
  Xinxin Hu, Rongsheng Zhou, Maoneng Hu, Jing Wen, Tong Shen:
  Differentiation and prediction of pneumoconiosis stage by computed tomography texture analysis based on U-Net neural network. 107098

Diagnostics and Decision Support

• 
  Jacopo Pavan, Chiara Dalla Man, David Herzig, Lia Bally, Simone Del Favero:
  Gluclas: A software for computer-aided modulation of glucose infusion in glucose clamp experiments. 107104

Section V: Others

• 
  Jianfeng Kang, Yucong Tian, Jibao Zheng, Di Lu, Kaican Cai, Ling Wang, Dichen Li:
  Functional design and biomechanical evaluation of 3D printing PEEK flexible implant for chest wall reconstruction. 107105

Section II: Biomedical signal and image processing methods

• 
  Xi Wu, Yilin Chen, Xinyu Li, Xueyu Liu, Yifei Liu, Yongfei Wu, Ming Li, Xiaoshuang Zhou, Chen Wang:
  IDA-MIL: Classification of Glomerular with Spike-like Projections via Multiple Instance Learning with Instance-level Data Augmentation. 107106