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Algorithms for Molecular Biology, Volume 13
Volume 13, Number 1, December 2018
- Md. Shamsuzzoha Bayzid, Tandy J. Warnow:
Gene tree parsimony for incomplete gene trees: addressing true biological loss. 1:1-1:12 - Nikolai Nøjgaard
, Manuela Geiß
Time-consistent reconciliation maps and forbidden time travel. 2:1-2:17 - Nidia Obscura Acosta, Veli Mäkinen
A safe and complete algorithm for metagenomic assembly. 3:1-3:12 - João A. Carriço, Maxime Crochemore, Alexandre P. Francisco
Fast phylogenetic inference from typing data. 4:1-4:14 - Kazunori D. Yamada
Derivative-free neural network for optimizing the scoring functions associated with dynamic programming of pairwise-profile alignment. 5:1-5:8 - Sarah A. Christensen
OCTAL: Optimal Completion of gene trees in polynomial time. 6:1-6:18 - Nidhi Shah, Stephen F. Altschul, Mihai Pop
Outlier detection in BLAST hits. 7:1-7:9 - Samuele Girotto
FSH: fast spaced seed hashing exploiting adjacent hashes. 8:1-8:11 - Pijus Simonaitis, Krister M. Swenson
Finding local genome rearrangements. 9:1-9:14 - Jingli Wu, Qian Zhang:
A fast and accurate enumeration-based algorithm for haplotyping a triploid individual. 10:1-10:10 - Michal Aleksander Ciach
Locus-aware decomposition of gene trees with respect to polytomous species trees. 11:1-11:18 - Alexander Donath
Split-inducing indels in phylogenomic analysis. 12:1-12:12 - Andre Rodrigues Oliveira
Sorting signed circular permutations by super short operations. 13:1-13:16 - Yves Frank, Tomas Hruz, Thomas Tschager
Improved de novo peptide sequencing using LC retention time information. 14:1-14:16 - Fabian Gärtner
Coordinate systems for supergenomes. 15:1-15:19 - Fabian Gärtner
Superbubbles revisited. 16:1-16:17 - Morten Muhlig Nielsen, Paula Tataru, Tobias Madsen, Asger Hobolth
Regmex: a statistical tool for exploring motifs in ranked sequence lists from genomics experiments. 17:1-17:11
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