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XSEDE 2013: San Diego, CA, USA
- Nancy Wilkins-Diehr:
Extreme Science and Engineering Discovery Environment: Gateway to Discovery, XSEDE13, San Diego, CA, USA - July 22 - 25, 2013. ACM 2013, ISBN 978-1-4503-2170-9
Science & engineering track
- Olgun Guvench:
New atomic resolution insights into dynamic protein-carbohydrate interactions enabled by high-performance computing. 1:1 - Mahdi Esmaily-Moghadam, Yuri Bazilevs, Alison L. Marsden
:
Low entropy data mapping for sparse iterative linear solvers. 2:1-2:4 - Yan Y. Liu, Mengyu Guo, Shaowen Wang:
Large-scale land use optimization by enhancing a scalable parallel genetic algorithm library. 3:1-3:2 - Mary A. Rohrdanz, Wenwei Zheng, Bradley Lambeth, Cecilia Clementi:
Multiscale characterization of macromolecular dynamics: application to photoacitve yellow protein. 4:1-4:4 - David Toth, Jimmy Franco, Charlotte Berkes:
Attacking HIV, tuberculosis and histoplasmosis with XSEDE resources. 5:1-5:6 - Claudiu Farcas, Natasha Balac, Lucila Ohno-Machado
Biomedical CyberInfrastructure challenges. 6:1-6:4 - Volodymyr Babin, Francesco Paesani:
Low-temperature isomers of the water hexamer as predicted by q-TIP4P/F and TTM3-F potentials. 7:1-7:5 - Ross C. Walker, Robin M. Betz
An investigation of the effects of error correcting code on GPU-accelerated molecular dynamics simulations. 8:1-8:3 - Ludwig Oser, Manisha Gajbe, Kentaro Nagamine
Alleviating the scaling problem of cosmological hydrodynamic simulations with HECA. 9:1-9:4 - Hui Zhang, Michael J. Boyles, Guangchen Ruan, Huian Li, Hongwei Shen, Masatoshi Ando:
XSEDE-enabled high-throughput lesion activity assessment. 10:1-10:8 - Monica Hall, Jacqueline C. Beckvermit, Charles A. Wight, Todd Harman, Martin Berzins:
The influence of an applied heat flux on the violence of reaction of an explosive device. 11:1-11:8 - Don Krieger, Malcolm McNeil, Jinyin Zhang, Walter Schneider, Xin Li, David O. Okonkwo:
Referee consensus: a platform technology for nonlinear optimization. 12:1-12:7 - Richard D. LeDuc, Thomas G. Doak, Le-Shin Wu, Philip D. Blood, Carrie L. Ganote, Matthew Vaughn
National Center for Genome Analysis support leverages XSEDE to support life science research. 13:1-13:7 - Lars Koesterke, Kent F. Milfeld, Matthew W. Vaughn
Optimizing the PCIT algorithm on stampede's Xeon and Xeon Phi processors for faster discovery of biological networks. 14:1-14:8 - Liana Diesendruck, Rob Kooper
Using Lucene to index and search the digitized 1940 US census. 15:1-15:7 - Brandon M. S. Erickson, Raminderjeet Singh, August E. Evrard:
Enabling dark energy survey science analysis with simulations on XSEDE resources. 16:1-16:8 - Abhinav Thota, Bernhard Haubold, Scott Michael
Making campus bridging work for researchers: a case study with mlRho. 17:1-17:8 - Y. Dora Cai, Channing Brown, Iftekhar Ahmed, Yannick Atouba Ada, Andrew Pilny, Marshall Scott Poole:
SocialMapExplorer: visualizing social networks of massively multiplayer online games in temporal-geographic space. 18:1-18:6 - Larissa Stanberry, Yuan Liu, Bhanu Rekepalli, Paul Giblock, Roger Higdon, William Broomall:
High performance computing workflow for protein functional annotation. 19:1-19:6 - Bo Xu, Yun Huang
Exploring Twitter networks in parallel computing environments. 20:1-20:5 - Joshua Elliott, David Kelly, Neil Best, Michael Wilde, Michael Glotter, Ian T. Foster:
The parallel system for integrating impact models and sectors (pSIMS). 21:1-21:8 - Jibonananda Sanyal
Supercomputer assisted generation of machine learning agents for the calibration of building energy models. 22:1-22:8 - Jack A. Smith, Yaakoub El Khamra, Melissa Romanus
Scalable online comparative genomics of mononucleosomes: a BigJob. 23:1-23:8 - Jiading Gai, Dong Ju Choi, David O'Neal, Mao Ye, Robert S. Sinkovits
Fast construction of nanosecond level snapshots of financial markets. 24:1-24:4 - Sitao Wu, Weizhong Li, Larry Smarr, Karen Nelson, Shibu Yooseph, Manolito Torralba:
Large memory high performance computing enables comparison across human gut microbiome of patients with autoimmune diseases and healthy subjects. 25:1-25:6 - Brian K. Radak, Tai-Sung Lee
A framework for flexible and scalable replica-exchange on production distributed CI. 26:1-26:8 - M. Brian Couger, Lenore Pipes, Philip D. Blood, Christopher E. Mason:
Enabling large-scale next-generation sequence assembly with Blacklight. 27:1-27:6
Software and software environments track
- Anand Padmanabhan
Integration of science gateways: a case study with CyberGIS and OpenTopography. 28:1-28:2 - Dmitry Pekurovsky
Scalable spectral transforms at petascale. 29:1-29:3 - David Rhee, Joseph Hargitai, R. Brent Calder, Pilib Ó Broin, Kevin R. Shieh, Aaron Golden:
'Spring through the gateway': deploying genomic workflows with XSEDE. 30:1-30:4 - Subhashini Sivagnanam, Vadim Astakhov, Kenneth Yoshimoto
A neuroscience gateway: software and implementation. 31:1-31:3 - James Taylor
A sustainable national gateway for biological computation. 32:1-32:3 - Anand Padmanabhan
FluMapper: an interactive CyberGIS environment for massive location-based social media data analysis. 33:1-33:2 - Ravi K. Madduri
Experiences in building a next-generation sequencing analysis service using galaxy, globus online and Amazon web service. 34:1-34:3 - Amit Chourasia, Mona Wong-Barnum, Michael L. Norman:
SeedMe preview: your results from disk to device. 35:1-35:4 - Xingfu Wu
MuMMI: multiple metrics modeling infrastructure for exploring performance and power modeling. 36:1-36:8 - Brian J. N. Wylie, Wolfgang Frings:
Scalasca support for MPI+OpenMP parallel applications on large-scale HPC systems based on Intel Xeon Phi. 37:1-37:8 - Guangchen Ruan, Hui Zhang, Beth Plale
Exploiting MapReduce and data compression for data-intensive applications. 38:1-38:8 - M. Shahbaz Memon, Norbert Attig
Improvements of the UltraScan scientific gateway to enable computational jobs on large-scale and open-standards based cyberinfrastructures. 39:1-39:7 - Mark A. Miller
Embedding CIPRES science gateway capabilities in phylogenetics software environments. 40:1-40:8 - Rajesh Kalyanam, Lan Zhao, Carol X. Song
iData: a community geospatial data sharing environment to support data-driven science. 41:1-41:6 - Pedro R. C. da Silveira, Lahiru Gunathilake, Alexander Holiday, Dave A. Yuen, M. Núñez Valdez, Renata M. Wentzcovitch:
Ab initio elasticity workflow in the VLab science gateway. 42:1-42:8 - Matthew R. Hanlon
Providing resource information to users of a national computing center. 43:1-43:8
Technology track
- Michael Campfield
The XSEDE ticket system: from concept to implementation. 44:1-44:5 - Mahidhar Tatineni, Jerry Greenberg, Richard P. Wagner, Eva Hocks, Christopher Irving:
Hadoop deployment and performance on Gordon data intensive supercomputer. 45:1-45:3 - Thomas R. Furlani
Using XDMoD to facilitate XSEDE operations, planning and analysis. 46:1-46:8 - Haihang You, Charng-Da Lu, Ziliang Zhao, Fei Xing:
Optimizing utilization across XSEDE platforms. 47:1-47:8 - Qingyu Meng, Alan Humphrey, John A. Schmidt, Martin Berzins:
Preliminary experiences with the uintah framework on Intel Xeon Phi and stampede. 48:1-48:8 - David E. Hudak, Thomas Bitterman, Patricia Carey, Douglas Johnson, Eric Franz, Shaun Brady, Piyush Diwan:
OSC OnDemand: a web platform integrating access to HPC systems, web and VNC applications. 49:1-49:6 - Charng-Da Lu, James C. Browne, Robert L. DeLeon, John L. Hammond, William L. Barth, Thomas R. Furlani
Comprehensive job level resource usage measurement and analysis for XSEDE HPC systems. 50:1-50:8 - Anup Mohan, Thomas J. Hacker, Gregory P. Rodgers:
Developing a high-volume batch submission system for earthquake engineering. 51:1-51:5 - Liwen Shih:
Adaptive latency-aware parallel resource mapping: task graph scheduling onto heterogeneous network topology. 52:1-52:8 - Jim Basney
CILogon: a federated X.509 certification authority for cyberinfrastructure logon. 53:1-53:7 - Magdalena Slawiñska, Michael Clark, Matthew Wolf, Tanja Bode, Hongbo Zou, Pablo Laguna, Jeremy Logan, Matthew Kinsey, Scott Klasky:
A Maya use case: adaptable scientific workflows with ADIOS for general relativistic astrophysics. 54:1-54:8 - David L. Hart
NCAR storage accounting and analysis possibilities. 55:1-55:7 - M. Shahbaz Memon, Morris Riedel
Enhancing the performance of scientific workflow execution in e-science environments by harnessing the standards based parameter sweep model. 56:1-56:7 - Homa Karimabadi, Burlen Loring
In-situ visualization for global hybrid simulations. 57:1-57:8 - Ritu Arora, Ejenio Capetillo, Purushotham V. Bangalore, Marjan Mernik:
A high-level framework for parallelizing legacy applications for multiple platforms. 58:1-58:8 - Rick Wagner
Using Gordon to accelerate LHC science. 59:1-59:4
Training education and outreach
- Steven I. Gordon
Providing a supported online course on parallel computing. 60:1-60:4 - Rubin H. Landau, Greg Mulder, Raquell Holmes, Sofya Borinskaya, NamHwa Kang, Cristian Bordeianu:
INSTANCES: incorporating computational scientific thinking advances into education & science courses. 61:1-61:4 - James B. Bottum, Ruth Marinshaw, Henry Neeman, James Pepin, J. Barr von Oehsen:
The condo of condos. 62:1-62:2 - Alan B. Craig:
Getting started with high performance computing for humanities, arts, and social science. 63:1 - Péter Molnár, David M. Toth, Rachel E. Vincent-Finley:
Development of undergraduate programs in computational science: panel. 64:1-64:2 - Emre H. Brookes, Raminderjeet Singh, Marlon E. Pierce
US-SOMO cluster methods: year one perspective. 65:1-65:2 - Rob Turknett, Brandt M. Westing, Samuel Moore:
1000 words: advanced visualization for the humanities. 66:1-66:3 - Scott A. Lathrop, Ange Mason, Steven I. Gordon
HPC university: getting information about computational science professional and educational resources and opportunities for engagement. 67:1-67:4 - Amy F. Szczepanski, Christal Yost, Norman Magden, Evan Meaney, Carolyn I. Staples:
Opposites attract: computational and quantitative outreach through artistic expressions. 68:1-68:7 - Matthew J. Turk
Scaling a code in the human dimension. 69:1-69:7 - Henry Neeman, Zane Gray, Dana Brunson
The Oklahoma cyberinfrastructure initiative. 70:1-70:6 - Dirk Colbry
The institute for cyber-enabled research: regional organization to promote computation in science. 71:1-71:6 - Linda Akli, Ruth Kravetz, Roger Moye:
A tale of three outreach programs: strategic collaboration across XSEDE outreach services. 72:1-72:4 - Linda Akli, Samuel L. Moore, Lorna I. Rivera, Patricia J. Teller:
Training, education, and outreach: raising the bar. 73:1-73:5 - Daniel Perry, Cecilia R. Aragon, Stephanie Cruz, Mette A. Peters, Jeanne Ting Chowning:
Human centered game design for bioinformatics and cyberinfrastructure learning. 74:1-74:8
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