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17th WABI 2017: Boston, MA, USA
- Russell Schwartz, Knut Reinert:
17th International Workshop on Algorithms in Bioinformatics, WABI 2017, August 21-23, 2017, Boston, MA, USA. LIPIcs 88, Schloss Dagstuhl - Leibniz-Zentrum für Informatik 2017, ISBN 978-3-95977-050-7 - Front Matter, Table of Contents, Preface, List of Authors. 0:i-0:xiv
- Bahar Alipanahi, Leena Salmela
, Simon J. Puglisi
Disentangled Long-Read De Bruijn Graphs via Optical Maps. 1:1-1:14 - Md. Shamsuzzoha Bayzid, Tandy J. Warnow:
Gene Tree Parsimony for Incomplete Gene Trees. 2:1-2:13 - Brian Brubach, Jay Ghurye, Mihai Pop, Aravind Srinivasan:
Better Greedy Sequence Clustering with Fast Banded Alignment. 3:1-3:13 - Yannis Almirantis, Panagiotis Charalampopoulos
Optimal Computation of Overabundant Words. 4:1-4:14 - Michal Aleksander Ciach
Detecting Locus Acquisition Events in Gene Trees. 5:1-5:13 - Amir H. Bayegan, Peter Clote:
An IP Algorithm for RNA Folding Trajectories. 6:1-6:16 - Samuele Girotto, Matteo Comin
Fast Spaced Seed Hashing. 7:1-7:14 - Nadia El-Mabrouk, Aïda Ouangraoua:
A General Framework for Gene Tree Correction Based on Duplication-Loss Reconciliation. 8:1-8:14 - Maxime Crochemore, Alexandre P. Francisco
Towards Distance-Based Phylogenetic Inference in Average-Case Linear-Time. 9:1-9:14 - Mohamed K. Gunady
Yanagi: Transcript Segment Library Construction for RNA-Seq Quantification. 10:1-10:14 - Chenyue W. Hu, Hanyang Li, Amina A. Qutub
Shrinkage Clustering: A Fast and Size-Constrained Algorithm for Biomedical Applications. 11:1-11:13 - Hosna Jabbari
Sparsification Enables Predicting Kissing Hairpin Pseudoknot Structures of Long RNAs in Practice. 12:1-12:13 - Jongkyu Kim, Knut Reinert
Vaquita: Fast and Accurate Identification of Structural Variation Using Combined Evidence. 13:1-13:14 - Anastasiia Abramova, Anton I. Korobeynikov:
Assessing the Significance of Peptide Spectrum Match Scores. 14:1-14:11 - Shunfu Mao, Soheil Mohajer, Kannan Ramchandran, David Tse, Sreeram Kannan:
abSNP: RNA-Seq SNP Calling in Repetitive Regions via Abundance Estimation. 15:1-15:14 - Sarvesh Nikumbh
All Fingers Are Not the Same: Handling Variable-Length Sequences in a Discriminative Setting Using Conformal Multi-Instance Kernels. 16:1-16:14 - Nikolai Nøjgaard
Forbidden Time Travel: Characterization of Time-Consistent Tree Reconciliation Maps. 17:1-17:12 - Fatemeh Almodaresi, Prashant Pandey, Rob Patro
Rainbowfish: A Succinct Colored de Bruijn Graph Representation. 18:1-18:15 - Anton Polishko, Md. Abid Hasan, Weihua Pan, Evelien M. Bunnik
ThIEF: Finding Genome-wide Trajectories of Epigenetics Marks. 19:1-19:16 - Petr Procházka, Jan Holub
Byte-Aligned Pattern Matching in Encoded Genomic Sequences. 20:1-20:13 - Jens Quedenfeld, Sven Rahmann:
Analysis of Min-Hashing for Variant Tolerant DNA Read Mapping. 21:1-21:13 - Abbas Roayaei Ardakany, Stefano Lonardi
Efficient and Accurate Detection of Topologically Associating Domains from Contact Maps. 22:1-22:11 - Nidhi Shah, Stephen F. Altschul, Mihai Pop:
Outlier Detection in BLAST Hits. 23:1-23:11 - Pijus Simonaitis, Krister M. Swenson:
Finding Local Genome Rearrangements. 24:1-24:13 - Jarkko Toivonen
Seed-driven Learning of Position Probability Matrices from Large Sequence Sets. 25:1-25:13 - Yves Frank, Tomas Hruz, Thomas Tschager, Valentin Venzin:
Improved De Novo Peptide Sequencing using LC Retention Time Information. 26:1-26:17 - Sarah A. Christensen, Erin K. Molloy, Pranjal Vachaspati, Tandy J. Warnow:
Optimal Completion of Incomplete Gene Trees in Polynomial Time Using OCTAL. 27:1-27:14
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