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Systems Biology and Regulatory Genomics 2005: San Diego, CA, USA
- Eleazar Eskin, Trey Ideker, Benjamin J. Raphael, Christopher T. Workman:
Systems Biology and Regulatory Genomics, Joint Annual RECOMB 2005 Satellite Workshops on Systems Biology and on Regulatory Genomics, San Diego, CA, USA; December 2-4, 2005, Revised Selected Papers. Lecture Notes in Computer Science 4023, Springer 2006, ISBN 978-3-540-48293-2 - Weihui Wu, Yongling Song, Shouguang Jin, Su-Shing Chen:
An Interactive Map of Regulatory Networks of Pseudomonas aeruginosa Genome. 1-10 - David L. Dill, Merrill Knapp, Pamela Gage, Carolyn L. Talcott, Keith Laderoute, Patrick Lincoln:
The Pathalyzer: A Tool for Analysis of Signal Transduction Pathways. 11-22 - Elena Zotenko, Katia S. Guimarães, Raja Jothi, Teresa M. Przytycka:
Decomposition of Overlapping Protein Complexes: A Graph Theoretical Method for Analyzing Static and Dynamic Protein Associations. 23-38 - Silpa Suthram, Tomer Shlomi, Eytan Ruppin, Roded Sharan, Trey Ideker
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Comparison of Protein-Protein Interaction Confidence Assignment Schemes. 39-50 - Michal Lapidot, Yitzhak Pilpel:
Characterization of the Effects of TF Binding Site Variations on Gene Expression Towards Predicting the Functional Outcomes of Regulatory SNPs. 51-61 - Michiel J. L. de Hoon, Dennis Vitkup:
Comparative Systems Biology of the Sporulation Initiation Network in Prokaryotes. 62-69 - Haseong Kim, Jae K. Lee, Taesung Park:
Improvement of Computing Times in Boolean Networks Using Chi-square Tests. 70-79 - Guandong Wang, Weixiong Zhang:
Build a Dictionary, Learn a Grammar, Decipher Stegoscripts, and Discover Genomic Regulatory Elements. 80-94 - David Kulp
Causal Inference of Regulator-Target Pairs by Gene Mapping of Expression Phenotypes. 95-106 - Orna Man, Joel L. Sussman, Yitzhak Pilpel:
Examination of the tRNA Adaptation Index as a Predictor of Protein Expression Levels. 107-118 - Gürkan Bebek, Petra Berenbrink, Colin Cooper, Tom Friedetzky, Joseph H. Nadeau, Süleyman Cenk Sahinalp:
Improved Duplication Models for Proteome Network Evolution. 119-137 - Chih-Yu Chen, Von-Wun Soo, Chi-Li Kuo:
Application of Expectation Maximization Clustering to Transcription Factor Binding Positions for cDNA Microarray Analysis. 138-149 - Elissa J. Chesler, Michael A. Langston:
Combinatorial Genetic Regulatory Network Analysis Tools for High Throughput Transcriptomic Data. 150-165 - Chien-Hung Huang, Jywe-Fei Fang, Jeffrey J. P. Tsai, Ka-Lok Ng:
Topological Robustness of the Protein-Protein Interaction Networks. 166-177 - Sudhakar Jonnalagadda, Rajagopalan Srinivasan:
A Bayesian Approach for Integrating Transcription Regulation and Gene Expression: Application to Saccharomyces Cerevisiae Cell Cycle Data. 178-187 - Wolfgang P. Lehrach, Dirk Husmeier, Christopher K. I. Williams:
Probabilistic in Silico Prediction of Protein-Peptide Interactions. 188-197 - Sing-Hoi Sze, Xiaoyan Zhao:
Improved Pattern-Driven Algorithms for Motif Finding in DNA Sequences. 198-211 - Huiquan Wang, Craig J. Benham:
Annotation of Promoter Regions in Microbial Genomes Based on DNA Structural and Sequence Properties. 212-224 - Li-San Wang, Shane T. Jensen, Sridhar Hannenhalli:
An Interaction-Dependent Model for Transcription Factor Binding. 225-234 - Xuefeng Zhou, Jianhua Ruan, Guandong Wang, Weixiong Zhang:
Computational Characterization and Identification of Core Promoters of MicroRNA Genes in C. elegans , H. sapiens and A. thaliana. 235-248 - Aviv A. Mezer
A Comprehensive Kinetic Model of the Exocytotic Process: Evaluation of the Reaction Mechanism. 249-257
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