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20. RECOMB 2016: Santa Monica, CA, USA
- Mona Singh:
Research in Computational Molecular Biology - 20th Annual Conference, RECOMB 2016, Santa Monica, CA, USA, April 17-21, 2016, Proceedings. Lecture Notes in Computer Science 9649, Springer 2016, ISBN 978-3-319-31956-8
RECOMB Retrospective
- Farhad Hormozdiari, Fereydoun Hormozdiari, Carl Kingsford, Paul Medvedev, Fabio Vandin:
The Second Decade of the International Conference on Research in Computational Molecular Biology (RECOMB). 3-16
Extended Abstracts
- Chandler Zuo, Kailei Chen, Sündüz Keles:
A MAD-Bayes Algorithm for State-Space Inference and Clustering with Application to Querying Large Collections of ChIP-Seq Data Sets. 19-36 - Hao Wang, Joel McManus, Carl Kingsford:
Accurate Recovery of Ribosome Positions Reveals Slow Translation of Wobble-Pairing Codons in Yeast. 37-52 - Meghana Kshirsagar, Jaime G. Carbonell, Judith Klein-Seetharaman, Keerthiram Murugesan:
Multitask Matrix Completion for Learning Protein Interactions Across Diseases. 53-64 - Simona Cristea, Jack Kuipers, Niko Beerenwinkel:
pathTiMEx: Joint Inference of Mutually Exclusive Cancer Pathways and Their Dependencies in Tumor Progression. 65-82 - Nilgun Donmez, Salem Malikic, Alexander W. Wyatt, Martin E. Gleave
, Colin C. Collins, Süleyman Cenk Sahinalp:
Clonality Inference from Single Tumor Samples Using Low Coverage Sequence Data. 83-94 - Nicoló Fusi, Jennifer Listgarten:
Flexible Modelling of Genetic Effects on Function-Valued Traits. 95-110 - Ahmed Sobih, Alexandru I. Tomescu
MetaFlow: Metagenomic Profiling Based on Whole-Genome Coverage Analysis with Min-Cost Flows. 111-121 - Mark A. Hallen, Jonathan D. Jou, Bruce Randall Donald:
LUTE (Local Unpruned Tuple Expansion): Accurate Continuously Flexible Protein Design with General Energy Functions and Rigid-rotamer-like Efficiency. 122-136 - David Pellow, Darya Filippova, Carl Kingsford:
Improving Bloom Filter Performance on Sequence Data Using k -mer Bloom Filters. 137-151 - Alexandru I. Tomescu
Safe and Complete Contig Assembly Via Omnitigs. 152-163 - Alexander Artyomenko, Nicholas C. Wu, Serghei Mangul, Eleazar Eskin, Ren Sun, Alex Zelikovsky
Long Single-Molecule Reads Can Resolve the Complexity of the Influenza Virus Composed of Rare, Closely Related Mutant Variants. 164-175 - Kristoffer Sahlin
Structural Variation Detection with Read Pair Information - An Improved Null-Hypothesis Reduces Bias. 176-188 - Mingfu Shao, Bernard M. E. Moret
On Computing Breakpoint Distances for Genomes with Duplicate Genes. 189-203 - Luis Antonio Brasil Kowada, Daniel Doerr, Simone Dantas, Jens Stoye
New Genome Similarity Measures Based on Conserved Gene Adjacencies. 204-224 - Constantinos Tsirogiannis, Brody Sandel:
Fast Phylogenetic Biodiversity Computations Under a Non-uniform Random Distribution. 225-236
Short Abstracts
- Joshua D. Welch, Ziqing Liu, Li Wang, Junjie Lu, Paul Lerou, Jeremy E. Purvis, Li Qian, Alexander J. Hartemink, Jan F. Prins:
SLICER: Inferring Branched, Nonlinear Cellular Trajectories from Single Cell RNA-seq Data. 239-240 - Chenchen Zou, Yuping Zhang, Zhengqing Ouyang:
Multi-track Modeling for Genome-Scale Reconstruction of 3D Chromatin Structure from Hi-C Data. 241 - Yael Steuerman, Irit Gat-Viks:
Revealing the Genetic Basis of Immune Traits in the Absence of Experimental Immunophenotyping. 242-243 - Emre Sefer, Ziv Bar-Joseph:
Shall We Dense? Comparing Design Strategies for Time Series Expression Experiments. 244-245 - Sean Simmons, S. Cenk Sahinalp, Bonnie Berger:
Enabling Privacy Preserving GWAS in Heterogeneous Human Populations. 246-247 - Victoria Popic, Serafim Batzoglou:
Efficient Privacy-Preserving Read Mapping Using Locality Sensitive Hashing and Secure Kmer Voting. 248-249 - Tommy Hansen, Fabio Vandin:
Finding Mutated Subnetworks Associated with Survival in Cancer. 250 - Mohammed El-Kebir, Gryte Satas, Layla Oesper, Benjamin J. Raphael:
Multi-state Perfect Phylogeny Mixture Deconvolution and Applications to Cancer Sequencing. 251 - Katharina Jahn, Jack Kuipers, Niko Beerenwinkel:
Tree Inference for Single-Cell Data. 252 - Yuqing Yang, Ning Chen, Ting Chen:
mLDM: A New Hierarchical Bayesian Statistical Model for Sparse Microbial Association Discovery. 253-254 - Yunan Luo, Jianyang Zeng, Bonnie Berger, Jian Peng:
Low-Density Locality-Sensitive Hashing Boosts Metagenomic Binning. 255-257 - Sergey Nurk, Dmitry Meleshko, Anton I. Korobeynikov, Pavel A. Pevzner:
metaSPAdes: A New Versatile de novo Metagenomics Assembler. 258 - Shashank Singh, Sabrina Rashid, Saket Navlakha, Ziv Bar-Joseph:
Distributed Gradient Descent in Bacterial Food Search. 259-260 - Phuong Dao, Jan Hoinka, Yijie Wang, Mayumi Takahashi, Jiehua Zhou, Fabrizio Costa, John Rossi, John Burnett, Rolf Backofen, Teresa M. Przytycka:
AptaTRACE: Elucidating Sequence-Structure Binding Motifs by Uncovering Selection Trends in HT-SELEX Experiments. 261-262 - John Wiedenhoeft, Eric Brugel, Alexander Schliep:
Fast Bayesian Inference of Copy Number Variants Using Hidden Markov Models with Wavelet Compression. 263 - Yang Li, Shiguo Zhou, David C. Schwartz, Jian Ma:
Allele-Specific Quantification of Structural Variations in Cancer Genomes. 264 - Yu Lin, Max W. Shen, Jeffrey Yuan, Mark Chaisson, Pavel A. Pevzner:
Assembly of Long Error-Prone Reads Using de Bruijn Graphs. 265 - Andreas D. M. Gunawan, Bhaskar DasGupta, Louxin Zhang:
Locating a Tree in a Reticulation-Visible Network in Cubic Time. 266 - Somaye Hashemifar, Qixing Huang, Jinbo Xu:
Joint Alignment of Multiple Protein-Protein Interaction Networks via Convex Optimization. 267-269 - Xiuli Ma, Guangyu Zhou, Jingjing Wang, Jian Peng, Jiawei Han:
Complexes Detection in Biological Networks via Diversified Dense Subgraphs Mining. 270-272
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