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13th ISMB 2005: Detroit, Michigan, USA (Supplement of Bioinformatics)
- Proceedings Thirteenth International Conference on Intelligent Systems for Molecular Biology 2005, Detroit, MI, USA, 25-29 June 2005. 2005
- H. V. Jagadish, David J. States, Burkhard Rost
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ISMB 2005. 1-2 - H. V. Jagadish, David J. States, Burkhard Rost:
ISMB 2005 Organization. 3-6 - Alberto Apostolico, Matteo Comin
Conservative extraction of over-represented extensible motifs. 9-18 - Grégory Batt, Delphine Ropers
Validation of qualitative models of genetic regulatory networks by model checking: analysis of the nutritional stress response in Escherichia coli. 19-28 - Tim Beißbarth, Jason A. Tye-Din
A systematic approach for comprehensive T-cell epitope discovery using peptide libraries. 29-37 - Asa Ben-Hur, William Stafford Noble:
Kernel methods for predicting protein-protein interactions. 38-46 - Karsten M. Borgwardt
Protein function prediction via graph kernels. 47-56 - Brona Brejová
ExonHunter: a comprehensive approach to gene finding. 57-65 - T. J. Brunette, Oliver Brock:
Improving protein structure prediction with model-based search. 66-74 - Jianlin Cheng
Three-stage prediction of protein ?-sheets by neural networks, alignments and graph algorithms. 75-84 - Kei-Hoi Cheung, Kevin Y. Yip
YeastHub: a semantic web use case for integrating data in the life sciences domain. 85-96 - Benny Chor, Tamir Tuller
Maximum likelihood of evolutionary trees: hardness and approximation. 97-106 - Melissa S. Cline, John Blume
ANOSVA: a statistical method for detecting splice variation from expression data. 107-115 - Juan Cortés, Thierry Siméon
A path planning approach for computing large-amplitude motions of flexible molecules. 116-125 - Matthew W. Dimmic, Melissa J. Hubisz
Detecting coevolving amino acid sites using Bayesian mutational mapping. 126-135 - Mary E. Dolan, Li Ni, Evelyn Camon, Judith A. Blake
A procedure for assessing GO annotation consistency. 136-143 - Delbert Dueck, Quaid Morris
Multi-way clustering of microarray data using probabilistic sparse matrix factorization. 144-151 - Robert C. Edgar, Eugene W. Myers:
PILER: identification and classification of genomic repeats. 152-158 - Jason Ernst, Gerard J. Nau
Clustering short time series gene expression data. 159-168 - Humberto Miguel Garay-Malpartida
CaSPredictor: a new computer-based tool for caspase substrate prediction. 169-176 - Peddinti V. Gopalacharyulu
Data integration and visualization system for enabling conceptual biology. 177-185 - Yoonsoo Hahn
Identification of nine human-specific frameshift mutations by comparative analysis of the human and the chimpanzee genome sequences. 186-194 - Eran Halperin, Gad Kimmel, Ron Shamir
Tag SNP selection in genotype data for maximizing SNP prediction accuracy. 195-203 - Sridhar Hannenhalli, Li-San Wang:
Enhanced position weight matrices using mixture models. 204-212 - Haiyan Hu, Xifeng Yan, Yu Huang, Jiawei Han, Xianghong Jasmine Zhou:
Mining coherent dense subgraphs across massive biological networks for functional discovery. 213-221 - Jim C. Huang, Quaid Morris
GenXHC: a probabilistic generative model for cross-hybridization compensation in high-density genome-wide microarray data. 222-231 - Henrik Jönsson, Marcus Heisler
Modeling the organization of the WUSCHEL expression domain in the shoot apical meristem. 232-240 - Raja Jothi
Predicting protein-protein interaction by searching evolutionary tree automorphism space. 241-250 - Lukas Käll
An HMM posterior decoder for sequence feature prediction that includes homology information. 251-257 - Jaeju Ko, Leonel F. Murga, Ying Wei, Mary Jo Ondrechen
Prediction of active sites for protein structures from computed chemical properties. 258-265 - Zhenzhen Kou, William W. Cohen, Robert F. Murphy:
High-recall protein entity recognition using a dictionary. 266-273 - Wei Li, Clifford A. Meyer, Xiaole Shirley Liu:
A hidden Markov model for analyzing ChIP-chip experiments on genome tiling arrays and its application to p53 binding sequences. 274-282 - Shaun Mahony
Improved detection of DNA motifs using a self-organized clustering of familial binding profiles. 283-291 - Ramgopal R. Mettu
High-throughput inference of protein-protein interfaces from unassigned NMR data. 292-301 - Elena Nabieva
Whole-proteome prediction of protein function via graph-theoretic analysis of interaction maps. 302-310 - Niranjan Nagarajan
Computing the P-value of the information content from an alignment of multiple sequences. 311-318 - Meenakshi Narayanaswamy, K. E. Ravikumar, K. Vijay-Shanker:
Beyond the clause: extraction of phosphorylation information from medline abstracts. 319-327 - Guy Nimrod, Fabian Glaser, David Steinberg, Nir Ben-Tal
In silico identification of functional regions in proteins. 328-337 - William Stafford Noble, Scott Kuehn, Robert E. Thurman, Man Yu, John A. Stamatoyannopoulos:
Predicting the in vivo signature of human gene regulatory sequence. 328-343 - Amol Prakash, Martin Tompa:
Statistics of local multiple alignments. 344-350 - Alkes L. Price, Neil Christopher Jones, Pavel A. Pevzner:
De novo identification of repeat families in large genomes. 351-358 - Sanjay Joshua Swamidass
Kernels for small molecules and the prediction of mutagenicity, toxicity and anti-cancer activity. 359-368 - Gunnar Rätsch
RASE: recognition of alternatively spliced exons in C.elegans. 369-377 - Tali Sadka, Michal Linial
Families of membranous proteins can be characterized by the amino acid composition of their transmembrane domains. 378-386 - Roded Sharan, Eugene W. Myers:
A motif-based framework for recognizing sequence families. 387-393 - Alena Shmygelska:
Search for folding nuclei in native protein structures. 394-402 - Andrew D. Smith
Mining ChIP-chip data for transcription factor and cofactor binding sites. 403-412 - Yun S. Song, Yufeng Wu, Dan Gusfield:
Efficient computation of close lower and upper bounds on the minimum number of recombinations in biological sequence evolution. 413-422 - Mat Soukup, HyungJun Cho
Robust classification modeling on microarray data using misclassification penalized posterior. 423-430 - Haixu Tang, Yehia Mechref
Automated interpretation of MS/MS spectra of oligosaccharides. 431-439 - Kannan Tharakaraman
Alignments anchored on genomic landmarks can aid in the identification of regulatory elements. 440-448 - Henry F. Winstanley, Sanne Abeln
How old is your fold? 449-458 - Yong Woo, Winfried Krueger, Anupinder Kaur, Gary A. Churchill:
Experimental design for three-color and four-color gene expression microarrays. 459-467 - Yoshihiro Yamanishi, Jean-Philippe Vert
Supervised enzyme network inference from the integration of genomic data and chemical information. 468-477 - Yuzhen Ye, Andrei Osterman, Ross A. Overbeek, Adam Godzik
Automatic detection of subsystem/pathway variants in genome analysis. 478-486 - Jiangsheng Yu, Xue-wen Chen:
Bayesian neural network approaches to ovarian cancer identification from high-resolution mass spectrometry data. 487-494 - Chenggang Yu, Nela Zavaljevski, Fred J. Stevens, Kelly Yackovich, Jaques Reifman:
Classifying noisy protein sequence data: a case study of immunoglobulin light chains. 495-501 - Chunfang Zheng, Aleksander Lenert
Reversal distance for partially ordered genomes. 502-508
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