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Vipin Sachdeva
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2020 – today
- 2022
- [c23]Chunshu Wu, Sahan Bandara, Tong Geng, Anqi Guo, Pouya Haghi, Vipin Sachdeva, Woody Sherman, Martin C. Herbordt:
Optimized Mappings for Symmetric Range-Limited Molecular Force Calculations on FPGAs. FPL 2022: 101-108 - 2021
- [c22]Chunshu Wu, Tong Geng, Sahan Bandara, Chen Yang, Vipin Sachdeva, Woody Sherman, Martin C. Herbordt:
Upgrade of FPGA Range-Limited Molecular Dynamics to Handle Hundreds of Processors. FCCM 2021: 142-151 - [c21]Lawrence C. Stewart, Carlo Pascoe, Emery Davis, Brian W. Sherman, Martin C. Herbordt, Vipin Sachdeva:
Particle Mesh Ewald for Molecular Dynamics in OpenCL on an FPGA Cluster. FCCM 2021: 270 - [c20]Chunshu Wu, Sahan Bandara, Tong Geng, Vipin Sachdeva, Woody Sherman, Martin C. Herbordt:
System-Level Modeling of GPU/FPGA Clusters for Molecular Dynamics Simulations. HPEC 2021: 1-8 - 2020
- [b1]Vipin Sachdeva:
Efficient Parallel Algorithms for error correction and transcriptome assembly of biological sequences. Georgia Institute of Technology, Atlanta, GA, USA, 2020 - [c19]Carlo Pascoe, Lawrence C. Stewart, Brian W. Sherman, Vipin Sachdeva, Martin C. Herbordt:
Execution of Complete Molecular Dynamics Simulations on Multiple FPGAs. HPEC 2020: 1-2 - [c18]Chunshu Wu, Tong Geng, Chen Yang, Vipin Sachdeva, Woody Sherman, Martin C. Herbordt:
A Communication-Efficient Multi-Chip Design for Range-Limited Molecular Dynamics. HPEC 2020: 1-8 - [i3]Lawrence C. Stewart, Carlo Pascoe, Brian W. Sherman, Martin C. Herbordt, Vipin Sachdeva:
An OpenCL 3D FFT for Molecular Dynamics Simulations on Multiple FPGAs. CoRR abs/2009.12617 (2020)
2010 – 2019
- 2019
- [c17]Chen Yang, Tong Geng, Tianqi Wang, Charles Lin, Jiayi Sheng, Vipin Sachdeva
, Woody Sherman
Molecular Dynamics Range-Limited Force Evaluation Optimized for FPGAs. ASAP 2019: 263-271 - [c16]Chen Yang, Tong Geng, Tianqi Wang, Rushi Patel, Qingqing Xiong, Ahmed Sanaullah, Chunshu Wu, Jiayi Sheng, Charles Lin, Vipin Sachdeva
Fully integrated FPGA molecular dynamics simulations. SC 2019: 67:1-67:31 - [i2]Chen Yang, Tong Geng, Tianqi Wang, Rushi Patel, Qingqing Xiong, Ahmed Sanaullah, Jiayi Sheng, Charles Lin, Vipin Sachdeva, Woody Sherman, Martin C. Herbordt:
Fully Integrated On-FPGA Molecular Dynamics Simulations. CoRR abs/1905.05359 (2019) - 2017
- [j4]Chang Sik Kim, Martyn D. Winn, Vipin Sachdeva
K-mer clustering algorithm using a MapReduce framework: application to the parallelization of the Inchworm module of Trinity. BMC Bioinform. 18(1): 467 (2017) - [c15]Chen Yang, Jiayi Sheng, Rushi Patel, Ahmed Sanaullah, Vipin Sachdeva
OpenCL for HPC with FPGAs: Case study in molecular electrostatics. HPEC 2017: 1-8 - [i1]Yu-Hang Tang, Lu Lu, He Li, Constantinos Evangelinos, Leopold Grinberg, Vipin Sachdeva, George E. Karniadakis:
OpenRBC: A Fast Simulator of Red Blood Cells at Protein Resolution. CoRR abs/1701.02059 (2017) - 2016
- [c14]Vipin Sachdeva
A Memory and Time Scalable Parallelization of the Reptile Error-Correction Code. IPDPS Workshops 2016: 453-462 - 2014
- [c13]Chang Sik Kim, Martyn D. Winn, Vipin Sachdeva
K-mer clustering algorithm using a MapReduce approach. BIBM 2014: 7-9 - [c12]Moustafa AbdelBaky, Javier Diaz Montes, Michael Johnston
Exploring HPC-based scientific software as a service using CometCloud. CollaborateCom 2014: 35-44 - [c11]Vipin Sachdeva
Parallelization of the Trinity Pipeline for De Novo Transcriptome Assembly. IPDPS Workshops 2014: 566-575 - 2013
- [j3]Constantinos Evangelinos, Robert Walkup, Vipin Sachdeva, Kirk E. Jordan, Hormozd Gahvari, I-Hsin Chung, Michael P. Perrone, Ligang Lu, Lurng-Kuo Liu, Karen A. Magerlein:
Determination of performance characteristics of scientific applications on IBM Blue Gene/Q. IBM J. Res. Dev. 57(1/2): 9 (2013) - 2012
- [j2]Moustafa AbdelBaky, Manish Parashar, Hyunjoo Kim, Kirk E. Jordan, Vipin Sachdeva
Enabling High-Performance Computing as a Service. Computer 45(10): 72-80 (2012) - [c10]Timothy J. Tautges, Jason Kraftcheck, Nathan Bertram, Vipin Sachdeva
Mesh Interface Resolution and Ghost Exchange in a Parallel Mesh Representation. IPDPS Workshops 2012: 1670-1679 - [c9]Mi Yan, Kirk E. Jordan, Dinesh K. Kaushik, Michael Perrone, Vipin Sachdeva
Coupling a Basin Modeling and a Seismic Code using MOAB. ICCS 2012: 986-993 - 2011
- [c8]Vipin Sachdeva
p_2Matlab: Productive Parallel Matlab for the Exascale. IPDPS Workshops 2011: 2109-2112 - 2010
- [c7]Vipin Sachdeva
Evaluating Cell/B.E software cache for ClustalW. ISCAS 2010: 3793-3796 - [p1]Vipin Sachdeva, Michael Kistler, Tzy-Hwa Kathy Tzeng:
Enabling Bioinformatics Algorithms on the Cell/B.E. Processor. Scientific Computing with Multicore and Accelerators 2010: 281-296
2000 – 2009
- 2009
- [c6]Vipin Sachdeva
Evaluating the Jaccard-Tanimoto Index on Multi-core Architectures. ICCS (1) 2009: 944-953 - 2008
- [j1]Vipin Sachdeva
Exploring the viability of the Cell Broadband Engine for bioinformatics applications. Parallel Comput. 34(11): 616-626 (2008) - 2007
- [c5]Vipin Sachdeva
Characterizing and Improving the Performance of Bioinformatics Workloads on the POWER5 Architecture. IISWC 2007: 89-97 - [c4]Vipin Sachdeva
Exploring the Viability of the Cell Broadband Engine for Bioinformatics Applications. IPDPS 2007: 1-8 - 2006
- [c3]Vipin Sachdeva
Poster reception - Pairwise alignments on the cell processor. SC 2006: 171 - 2005
- [c2]David A. Bader, Vipin Sachdeva:
A Cache-Aware Parallel Implementation of the Push-Relabel Network Flow Algorithm and Experimental Evaluation of the Gap Relabeling Heuristic. PDCS 2005: 41-48 - [c1]David A. Bader
Incorporating life sciences applications in the architectural optimizations of next-generation petaflop-system. CSB Workshops 2005: 83-84
Coauthor Index
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