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Giovanni Birolo

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Journal Articles

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2024
[j9]
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  - journals/cbm/RolloPBRSF24
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Cesare Rollo, Corrado Pancotti, Giovanni Birolo, Ivan Rossi, Tiziana Sanavia, Piero Fariselli:
SYNDSURV: A simple framework for survival analysis with data distributed across multiple institutions. Comput. Biol. Medicine 172: 108288 (2024)
[j8]
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Moreno Marzolla, Giovanni Birolo, Gabriele D'Angelo, Piero Fariselli:
Parallel intersection counting on shared-memory multiprocessors and GPUs. Future Gener. Comput. Syst. 159: 423-431 (2024)
2023
[j7]
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  - journals/artmed/TavazziLVATRMCBSGBPBCMCMGABDFMC23
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Erica Tavazzi, Enrico Longato, Martina Vettoretti, Helena Aidos, Isotta Trescato, Chiara Roversi, Andreia S. Martins, Eduardo N. Castanho, Ruben Branco, Diogo F. Soares, Alessandro Guazzo, Giovanni Birolo, Daniele Pala, Pietro Bosoni, Adriano Chiò, Umberto Manera, Mamede de Carvalho, Bruno Miranda, Marta Gromicho, Inês Alves, Riccardo Bellazzi, Arianna Dagliati, Piero Fariselli, Sara C. Madeira, Barbara Di Camillo:
Artificial intelligence and statistical methods for stratification and prediction of progression in amyotrophic lateral sclerosis: A systematic review. Artif. Intell. Medicine 142: 102588 (2023)
[j6]
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  - journals/ploscb/AneliFCBRB23
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Serena Aneli, Piero Fariselli, Elena Chierto, Carla Bini, Carlo Robino, Giovanni Birolo:
Recombulator-X: A fast and user-friendly tool for estimating X chromosome recombination rates in forensic genetics. PLoS Comput. Biol. 19(9) (2023)
2022
[j5]
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Corrado Pancotti, Silvia Benevenuta, Giovanni Birolo, Virginia Alberini, Valeria Repetto, Tiziana Sanavia, Emidio Capriotti, Piero Fariselli:
Predicting protein stability changes upon single-point mutation: a thorough comparison of the available tools on a new dataset. Briefings Bioinform. 23(2) (2022)
[j4]
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Giovanni Birolo, Andrea Telatin:
BamToCov: an efficient toolkit for sequence coverage calculations. Bioinform. 38(9): 2617-2618 (2022)
[j3]
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  - journals/nar/MontanucciCBBPL22
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Ludovica Montanucci, Emidio Capriotti, Giovanni Birolo, Silvia Benevenuta, Corrado Pancotti, Dennis Lal, Piero Fariselli:
DDGun: an untrained predictor of protein stability changes upon amino acid variants. Nucleic Acids Res. 50(W1): 222-227 (2022)
2020
[j2]
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  - journals/jossw/BiroloT20
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Giovanni Birolo, Andrea Telatin:
covtobed: a simple and fast tool to extract coverage tracks from BAM files. J. Open Source Softw. 5(47): 2119 (2020)
2017
[j1]
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  - journals/bmcbi/BertoldiFVBPFSA17
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Loris Bertoldi, Claudio Forcato, Nicola Vitulo, Giovanni Birolo, Fabio De Pascale, Erika Feltrin, Riccardo Schiavon, Franca Anglani, Susanna Negrisolo, Alessandra Zanetti, Francesca D'Avanzo, Rosella Tomanin, Georgine Faulkner, Alessandro Vezzi, Giorgio Valle:
QueryOR: a comprehensive web platform for genetic variant analysis and prioritization. BMC Bioinform. 18(1): 225:1-225:11 (2017)

Conference and Workshop Papers

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2024
[c11]
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  - conf/clef/BiroloBFABCCDCNFDGGLMMM24
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Giovanni Birolo, Pietro Bosoni, Guglielmo Faggioli, Helena Aidos, Roberto Bergamaschi, Paola Cavalla, Adriano Chiò, Arianna Dagliati, Mamede de Carvalho, Giorgio Maria Di Nunzio, Piero Fariselli, Jose Manuel García Dominguez, Marta Gromicho, Alessandro Guazzo, Enrico Longato, Sara C. Madeira, Umberto Manera, Stefano Marchesin, Laura Menotti, Gianmaria Silvello, Eleonora Tavazzi, Erica Tavazzi, Isotta Trescato, Martina Vettoretti, Barbara Di Camillo, Nicola Ferro:
Intelligent Disease Progression Prediction: Overview of iDPP@CLEF 2024. CLEF (2) 2024: 118-139
[c10]
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Giovanni Birolo, Pietro Bosoni, Guglielmo Faggioli, Helena Aidos, Roberto Bergamaschi, Paola Cavalla, Adriano Chiò, Arianna Dagliati, Mamede de Carvalho, Giorgio Maria Di Nunzio, Piero Fariselli, Jose Manuel García Dominguez, Marta Gromicho, Alessandro Guazzo, Enrico Longato, Sara C. Madeira, Umberto Manera, Stefano Marchesin, Laura Menotti, Gianmaria Silvello, Eleonora Tavazzi, Erica Tavazzi, Isotta Trescato, Martina Vettoretti, Barbara Di Camillo, Nicola Ferro:
Overview of iDPP@CLEF 2024: The Intelligent Disease Progression Prediction Challenge. CLEF (Working Notes) 2024: 1312-1331
[c9]
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Guido Barducci, Flavio Sartori, Giovanni Birolo, Tiziana Sanavia, Piero Fariselli:
ALSFRS-R Score Prediction for Amyotrophic Lateral Sclerosis. CLEF (Working Notes) 2024: 1332-1340
2023
[c8]
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  - conf/clef/FaggioliGMMTABBCCDCNFDGLMMSTTVCF23
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Guglielmo Faggioli, Alessandro Guazzo, Stefano Marchesin, Laura Menotti, Isotta Trescato, Helena Aidos, Roberto Bergamaschi, Giovanni Birolo, Paola Cavalla, Adriano Chiò, Arianna Dagliati, Mamede de Carvalho, Giorgio Maria Di Nunzio, Piero Fariselli, Jose Manuel García Dominguez, Marta Gromicho, Enrico Longato, Sara C. Madeira, Umberto Manera, Gianmaria Silvello, Eleonora Tavazzi, Erica Tavazzi, Martina Vettoretti, Barbara Di Camillo, Nicola Ferro:
Intelligent Disease Progression Prediction: Overview of iDPP@CLEF 2023. CLEF 2023: 343-369
[c7]
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Guglielmo Faggioli, Alessandro Guazzo, Stefano Marchesin, Laura Menotti, Isotta Trescato, Helena Aidos, Roberto Bergamaschi, Giovanni Birolo, Paola Cavalla, Adriano Chiò, Arianna Dagliati, Mamede de Carvalho, Giorgio Maria Di Nunzio, Piero Fariselli, Jose Manuel García Dominguez, Marta Gromicho, Enrico Longato, Sara C. Madeira, Umberto Manera, Gianmaria Silvello, Eleonora Tavazzi, Erica Tavazzi, Martina Vettoretti, Barbara Di Camillo, Nicola Ferro:
Overview of iDPP@CLEF 2023: The Intelligent Disease Progression Prediction Challenge. CLEF (Working Notes) 2023: 1123-1164
[c6]
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Ivan Rossi, Giovanni Birolo, Piero Fariselli:
Multiple Sclerosis Survival Prediction Results from DSM-COMPBIO UNITO. CLEF (Working Notes) 2023: 1298-1304
2022
[c5]
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  - conf/clef/GuazzoTLHDFNSVT22a
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Alessandro Guazzo, Isotta Trescato, Enrico Longato, Enidia Hazizaj, Dennis Dosso, Guglielmo Faggioli, Giorgio Maria Di Nunzio, Gianmaria Silvello, Martina Vettoretti, Erica Tavazzi, Chiara Roversi, Piero Fariselli, Sara C. Madeira, Mamede de Carvalho, Marta Gromicho, Adriano Chiò, Umberto Manera, Arianna Dagliati, Giovanni Birolo, Helena Aidos, Barbara Di Camillo, Nicola Ferro:
Intelligent Disease Progression Prediction: Overview of iDPP@CLEF 2022. CLEF 2022: 395-422
[c4]
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Alessandro Guazzo, Isotta Trescato, Enrico Longato, Enidia Hazizaj, Dennis Dosso, Guglielmo Faggioli, Giorgio Maria Di Nunzio, Gianmaria Silvello, Martina Vettoretti, Erica Tavazzi, Chiara Roversi, Piero Fariselli, Sara C. Madeira, Mamede de Carvalho, Marta Gromicho, Adriano Chiò, Umberto Manera, Arianna Dagliati, Giovanni Birolo, Helena Aidos, Barbara Di Camillo, Nicola Ferro:
Overview of iDPP@CLEF 2022: The Intelligent Disease Progression Prediction Challenge. CLEF (Working Notes) 2022: 1130-1210
[c3]
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Corrado Pancotti, Giovanni Birolo, Tiziana Sanavia, Cesare Rollo, Piero Fariselli:
Multi-Event Survival Prediction for Amyotrophic Lateral Sclerosis. CLEF (Working Notes) 2022: 1269-1276
2013
[c2]
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  - conf/csl/AschieriBB13
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Federico Aschieri, Stefano Berardi, Giovanni Birolo:
Realizability and Strong Normalization for a Curry-Howard Interpretation of HA + EM1. CSL 2013: 45-60
[c1]
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Giovanni Birolo:
Interpreting a Classical Geometric Proof with Interactive Realizability. COS 2013: 30-44

Data and Artifacts

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2023
[d1]
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  - data/10/FaggioliGMMTABBCCDCNFDG23
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Guglielmo Faggioli, Alessandro Guazzo, Stefano Marchesin, Laura Menotti, Isotta Trescato, Helena Aidos, Roberto Bergamaschi, Giovanni Birolo, Paola Cavalla, Adriano Chiò, Arianna Dagliati, Mamede de Carvalho, Giorgio Maria Di Nunzio, Piero Fariselli, Jose Manuel García Dominguez, Marta Gromicho, Enrico Longato, Sara C. Madeira, Umberto Manera, Gianmaria Silvello, Eleonora Tavazzi, Erica Tavazzi, Martina Vettoretti, Barbara Di Camillo, Nicola Ferro:
iDPP@CLEF 2023 - Participants' repositories for the Intelligent Disease Prediction Progression Challenge. Zenodo, 2023

Informal and Other Publications

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2023
[i4]
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  - journals/corr/abs-2304-02383
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Antoine Passemiers, Pietro Folco, Daniele Raimondi, Giovanni Birolo, Yves Moreau, Piero Fariselli:
How good Neural Networks interpretation methods really are? A quantitative benchmark. CoRR abs/2304.02383 (2023)
2013
[i3]
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  - journals/corr/abs-1304-4091
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Giovanni Birolo:
Interactive Realizability, Monads and Witness Extraction. CoRR abs/1304.4091 (2013)
[i2]
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  - journals/corr/abs-1305-3388
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Giovanni Birolo:
A Witness Extraction Technique by Proof Normalization Based on Interactive Realizability. CoRR abs/1305.3388 (2013)
[i1]
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  - journals/corr/Birolo13a
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Giovanni Birolo:
A Monadic Framework for Interactive Realizability. CoRR abs/1310.3971 (2013)

Coauthor Index

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