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Katherine P. Liao
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2020 – today
- 2024
- [j20]Jacqueline Honerlaw
, Yuk-Lam Ho, Francesca Fontin, Michael Murray, Ashley Galloway
Centralized Interactive Phenomics Resource: an integrated online phenomics knowledgebase for health data users. J. Am. Medical Informatics Assoc. 31(5): 1126-1134 (2024) - [j19]Jun Wen
LATTE: Label-efficient incident phenotyping from longitudinal electronic health records. Patterns 5(1): 100906 (2024) - [i3]Rui Duan, Xin Xiong, Jueyi Liu, Katherine P. Liao, Tianxi Cai:
Federated One-Shot Ensemble Clustering. CoRR abs/2409.08396 (2024) - [i2]Hongyi Yuan, Suqi Liu, Kelly Cho, Katherine P. Liao, Alexandre Pereira, Tianxi Cai:
Unified Representation of Genomic and Biomedical Concepts through Multi-Task, Multi-Source Contrastive Learning. CoRR abs/2410.10144 (2024) - 2023
- [j18]Jun Wen
Multimodal representation learning for predicting molecule-disease relations. Bioinform. 39(2) (2023) - [j17]Jacqueline Honerlaw
Framework of the Centralized Interactive Phenomics Resource (CIPHER) standard for electronic health data-based phenomics knowledgebase. J. Am. Medical Informatics Assoc. 30(5): 958-964 (2023) - [j16]Chuan Hong
Semi-supervised calibration of noisy event risk (SCANER) with electronic health records. J. Biomed. Informatics 144: 104425 (2023) - [j15]Molei Liu, Yi Zhang, Katherine P. Liao, Tianxi Cai:
Augmented Transfer Regression Learning with Semi-non-parametric Nuisance Models. J. Mach. Learn. Res. 24: 293:1-293:50 (2023) - [i1]Jun Wen, Jue Hou, Clara-Lea Bonzel, Yihan Zhao, Victor M. Castro, Vivian S. Gainer, Dana Weisenfeld, Tianrun Cai, Yuk-Lam Ho, Vidul Ayakulangara Panickan, Lauren Costa, Chuan Hong, J. Michael Gaziano, Katherine P. Liao, Junwei Lu, Kelly Cho, Tianxi Cai:
LATTE: Label-efficient Incident Phenotyping from Longitudinal Electronic Health Records. CoRR abs/2305.11407 (2023) - 2022
- [j14]Nicholas B. Link, Sicong Huang, Tianrun Cai, Jiehuan Sun, Kumar Dahal, Lauren Costa, Kelly Cho, Katherine P. Liao, Tianxi Cai, Chuan Hong:
Binary acronym disambiguation in clinical notes from electronic health records with an application in computational phenotyping. Int. J. Medical Informatics 162: 104753 (2022) - [j13]Tianrun Cai, Zeling He, Chuan Hong, Yichi Zhang, Yuk-Lam Ho, Jacqueline Honerlaw, Alon Geva, Vidul Ayakulangara Panickan
Scalable relevance ranking algorithm via semantic similarity assessment improves efficiency of medical chart review. J. Biomed. Informatics 132: 104109 (2022) - [j12]Doudou Zhou, Ziming Gan, Xu Shi
Multiview Incomplete Knowledge Graph Integration with application to cross-institutional EHR data harmonization. J. Biomed. Informatics 133: 104147 (2022) - [c7]Molei Liu, Sara Morini, Xin Xiong, Chuan Hong, Clara-Lea Bonzel, Vidul Ayakulangara Panickan, Everett Neil Rush, Yuk-Lam Ho, Kelly Cho, J. Michael Gaziano, Katherine P. Liao, Tianxi Cai, Tianrun Cai:
Knowledge-Driven Online Multimodal Automated Phenotyping System. AMIA 2022 - 2021
- [j11]Harrison G. Zhang
ATLAS: an automated association test using probabilistically linked health records with application to genetic studies. J. Am. Medical Informatics Assoc. 28(12): 2582-2592 (2021) - [j10]Chuan Hong
Clinical knowledge extraction via sparse embedding regression (KESER) with multi-center large scale electronic health record data. npj Digit. Medicine 4 (2021)
2010 – 2019
- 2019
- [j9]Katherine P. Liao, Jiehuan Sun, Tianrun A. Cai, Nicholas B. Link, Chuan Hong, Jie Huang, Jennifer E. Huffman, Jessica L. Gronsbell
High-throughput multimodal automated phenotyping (MAP) with application to PheWAS. J. Am. Medical Informatics Assoc. 26(11): 1255-1262 (2019) - [j8]Wenxin Ning, Stephanie Chan, Andrew Beam, Ming Yu, Alon Geva
Feature extraction for phenotyping from semantic and knowledge resources. J. Biomed. Informatics 91 (2019) - [j7]Luwan Zhang
Automated grouping of medical codes via multiview banded spectral clustering. J. Biomed. Informatics 100 (2019) - [j6]Tianrun A. Cai
EXTraction of EMR numerical data: an efficient and generalizable tool to EXTEND clinical research. BMC Medical Informatics Decis. Mak. 19(1): 226:1-226:7 (2019) - 2018
- [j5]Sheng Yu, Yumeng Ma, Jessica L. Gronsbell
Enabling phenotypic big data with PheNorm. J. Am. Medical Informatics Assoc. 25(1): 54-60 (2018) - [j4]Jennifer A. Sinnott, Fiona Cai, Sheng Yu, Boris P. Hejblum
PheProb: probabilistic phenotyping using diagnosis codes to improve power for genetic association studies. J. Am. Medical Informatics Assoc. 25(10): 1359-1365 (2018) - [c6]Katherine P. Liao, Jiehuan Sun, Tianrun A. Cai, Nicholas B. Link, Chuan Hong, Jie Huang, Jennifer E. Huffman, Jessica L. Gronsbell, Lauren Costa, Victor M. Castro, Vivian S. Gainer, Shawn N. Murphy, J. Michael Gaziano, Kelly Cho, Peter Szolovits, Isaac S. Kohane, Sheng Yu, Tianxi Cai:
High-Throughput Multimodal Automated Phenotyping (MAP) Incorporating Natural Language Processing with Application to PheWAS. AMIA 2018 - 2017
- [j3]Sheng Yu
Surrogate-assisted feature extraction for high-throughput phenotyping. J. Am. Medical Informatics Assoc. 24(e1): e143-e149 (2017) - [c5]Tianrun A. Cai, Andrew Beam, Stephanie Chan, Jacqueline Honerlaw, Yichi Zhang, David R. Gagnon, Kelly Cho, J. Michael Gaziano, Katherine P. Liao, Tianxi Cai:
Improving EHR Chart Review Efficiency via Semantic Similarity Assessment. AMIA 2017 - [c4]Sheng Yu, Yumeng Ma, Jessica L. Gronsbell, Katherine P. Liao, Tianrun A. Cai, Ashwin N. Ananthakrishnan, Vivian S. Gainer, Susanne E. Churchill, Peter Szolovits, Shawn N. Murphy, Isaac S. Kohane, Tianxi Cai:
High-throughput Phenotyping via Denoised Normal Mixture Transformation. AMIA 2017 - 2015
- [j2]Sheng Yu
Toward high-throughput phenotyping: unbiased automated feature extraction and selection from knowledge sources. J. Am. Medical Informatics Assoc. 22(5): 993-1000 (2015) - [c3]Uri Kartoun, Vishesh Kumar, Su-Chun Cheng, Sheng Yu, Katherine P. Liao, Elizabeth W. Karlson, Ashwin N. Ananthakrishnan, Zongqi Xia, Vivian S. Gainer, Andrew Cagan, Guergana Savova, Pei J. Chen, Shawn N. Murphy, Susanne E. Churchill, Isaac S. Kohane, Peter Szolovits, Tianxi Cai, Stanley Y. Shaw:
Demonstrating the Advantages of Applying Data Mining Techniques on Time-Dependent Electronic Medical Records. AMIA 2015 - 2014
- [c2]Robert J. Carroll, Jeremy L. Warner, Anne E. Eyler, Charles Moore, Jayanth Doss, Katherine P. Liao, Robert M. Plenge, Joshua C. Denny:
PheWAS and Genetics Define Subphenotypes in Drug Response. AMIA 2014 - 2012
- [j1]Robert J. Carroll, William K. Thompson, Anne E. Eyler, Arthur M. Mandelin, Tianxi Cai, Raquel M. Zink, Jennifer A. Pacheco
Portability of an algorithm to identify rheumatoid arthritis in electronic health records. J. Am. Medical Informatics Assoc. 19(e1) (2012) - [c1]Robert J. Carroll, Katherine P. Liao, Anne E. Eyler, Lisa Bastarache, Dana C. Crawford, Peggy L. Peissig, Jyotishman Pathak, David Carrell, Abel N. Kho, Rongling Li, Daniel R. Masys, Gail P. Jarvik, Christopher G. Chute, Rex L. Chisholm, Eric B. Larson, Catherine A. McCarty, Iftikhar J. Kullo:
Using PheWAS to Assess Pleiotropy of Genetic Risk Scores for Rheumatoid Arthritis and Coronary Artery Disease in the eMERGE Network. AMIA 2012
Coauthor Index
aka: Tianrun Cai
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