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Tamar Schlick
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- affiliation: New York University, New York, Department of Chemistry, USA
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2020 – today
- 2021
- [j32]Tamar Schlick
, Stephanie Portillo-Ledesma:
Biomolecular modeling thrives in the age of technology. Nat. Comput. Sci. 1(5): 321-331 (2021) - [j31]Tamar Schlick
Publisher Correction: Biomolecular modeling thrives in the age of technology. Nat. Comput. Sci. 1(11): 767 (2021) - 2020
- [j30]Grace Meng, Marva Tariq, Swati Jain, Shereef Elmetwaly, Tamar Schlick:
RAG-Web: RNA structure prediction/design using RNA-As-Graphs. Bioinform. 36(2): 647-648 (2020)
2010 – 2019
- 2019
- [j29]Jaewoon Jung
Scaling molecular dynamics beyond 100, 000 processor cores for large-scale biophysical simulations. J. Comput. Chem. 40(21): 1919-1930 (2019) - [c2]Louis Petingi
Graph-Theoretic Partitioning of RNAs and Classification of Pseudoknots. AlCoB 2019: 68-79 - 2016
- [i1]Lei Hua, Yang Song, Namhee Kim, Christian Laing, Jason T. L. Wang, Tamar Schlick:
CHSalign: A Web Server That Builds upon Junction-Explorer and RNAJAG for Pairwise Alignment of RNA Secondary Structures with Coaxial Helical Stacking. CoRR abs/1609.01987 (2016) - 2015
- [j28]Bret D. Freudenthal, William A. Beard, Lalith E. Perera
Uncovering the polymerase-induced cytotoxicity of an oxidized nucleotide. Nat. 517(7536): 635-639 (2015) - 2013
- [j27]Yunlang Li, Tamar Schlick
"Gate-keeper" Residues and Active-Site Rearrangements in DNA Polymerase μ Help Discriminate Non-cognate Nucleotides. PLoS Comput. Biol. 9(5) (2013) - 2012
- [j26]Giulio Quarta
Dynamic Energy Landscapes of Riboswitches Help Interpret Conformational Rearrangements and Function. PLoS Comput. Biol. 8(2) (2012) - 2011
- [j25]Joseph A. Izzo, Namhee Kim, Shereef Elmetwaly
RAG: An Update to the RNA-As-Graphs Resource. BMC Bioinform. 12: 219 (2011)
2000 – 2009
- 2007
- [j24]Namhee Kim, Jin Sup Shin, Shereef Elmetwaly
RAGPOOLS: RNA-As-Graph-Pools - a web server for assisting the design of structured RNA pools for in vitro selection. Bioinform. 23(21): 2959-2960 (2007) - 2006
- [j23]Tamar Schlick
Special Section On Multiscale Modeling In Biology. Multiscale Model. Simul. 5(4): 1174 (2006) - 2004
- [j22]Hin Hark Gan, Daniela Fera, Julie Zorn, Nahum Shiffeldrim, Michael Tang, Uri Laserson, Namhee Kim, Tamar Schlick
RAG: RNA-As-Graphs database-concepts, analysis, features. Bioinform. 20(8): 1285-1291 (2004) - [j21]Daniela Fera, Namhee Kim, Nahum Shiffeldrim, Julie Zorn, Uri Laserson, Hin Hark Gan, Tamar Schlick
RAG: RNA-As-Graphs web resource. BMC Bioinform. 5: 88 (2004) - [c1]Uri Laserson, Hin Hark Gan, Tamar Schlick:
Searching for 2D RNA geometries in bacterial genomes. SCG 2004: 373-377 - 2003
- [j20]Danny Barash, Linjing Yang, Xiaoliang Qian, Tamar Schlick
Inherent speedup limitations in multiple time step/particle mesh Ewald algorithms. J. Comput. Chem. 24(1): 77-88 (2003) - [j19]Qing Zhang, Daniel A. Beard
Constructing irregular surfaces to enclose macromolecular complexes for mesoscale modeling using the discrete surface charge optimization (DISCO) algorithm. J. Comput. Chem. 24(16): 2063-2074 (2003) - [j18]Danny Barash, Tamar Schlick
Multiplicative Operator Splittings in Nonlinear Diffusion: From Spatial Splitting to Multiple Timesteps. J. Math. Imaging Vis. 19(1): 33-48 (2003) - 2002
- [j17]Dexuan Xie, Tamar Schlick
A More Lenient Stopping Rule for Line Search Algorithms. Optim. Methods Softw. 17(4): 683-700 (2002) - 2001
- [j16]Xiaoliang Qian, Daniel Strahs, Tamar Schlick
A new program for optimizing periodic boundary models of solvated biomolecules (PBCAID). J. Comput. Chem. 22(15): 1843-1850 (2001) - 2000
- [j15]Tamar Schlick
Computational challenges in simulating large DNA over long times. Comput. Sci. Eng. 2(6): 38-51 (2000) - [j14]Dexuan Xie, Alexander Tropsha, Tamar Schlick
An Efficient Projection Protocol for Chemical Databases: Singular Value Decomposition Combined with Truncated-Newton Minimization. J. Chem. Inf. Comput. Sci. 40(1): 167-177 (2000)
1990 – 1999
- 1999
- [j13]Dexuan Xie, Tamar Schlick
Efficient Implementation of the Truncated-Newton Algorithm for Large-Scale Chemistry Applications. SIAM J. Optim. 10(1): 132-154 (1999) - [j12]Dexuan Xie, Tamar Schlick
Remark on Algorithm 702 - the updated truncated Newton minimization package. ACM Trans. Math. Softw. 25(1): 108-122 (1999) - [p1]Tamar Schlick
Some Failures and Successes of Long-Timestep Approaches to Biomolecular Simulations. Computational Molecular Dynamics 1999: 227-262 - 1998
- [j11]Leonid Y. Zaslavsky, Tamar Schlick
An adaptive multigrid technique for evaluating long-range forces in biomolecular simulations. Appl. Math. Comput. 97(2-3): 237-250 (1998) - 1997
- [j10]Robert D. Skeel, Guihua Zhang, Tamar Schlick
A Family of Symplectic Integrators: Stability, Accuracy, and Molecular Dynamics Applications. SIAM J. Sci. Comput. 18(1): 203-222 (1997) - 1994
- [j9]Philippe Derreumaux, Guihua Zhang, Tamar Schlick
A Truncated Newton Minimizer Adapted for CHARMM and Biomolecular Applications. J. Comput. Chem. 15(5): 532-552 (1994) - [j8]Victoria Z. Averbukh, Samuel Figueroa, Tamar Schlick
Remark on Algorithm 566. ACM Trans. Math. Softw. 20(3): 282-285 (1994) - 1993
- [j7]Guihua Zhang, Tamar Schlick
LIN: A new algorithm to simulate the dynamics of biomolecules by combining implicit-integration and normal mode techniques. J. Comput. Chem. 14(10): 1212-1233 (1993) - [j6]X. Zou, Ionel Michael Navon, M. Berger, Paul Kang-Hoh Phua, Tamar Schlick
Numerical Experience with Limited-Memory Quasi-Newton and Truncated Newton Methods. SIAM J. Optim. 3(3): 582-608 (1993) - [j5]Tamar Schlick
Modified Cholesky Factorizations for Sparse Preconditioners. SIAM J. Sci. Comput. 14(2): 424-445 (1993) - 1992
- [j4]Tamar Schlick
TNPACK - A truncated Newton minimization package for large-scale problems: I. Algorithm and usage. ACM Trans. Math. Softw. 18(1): 46-70 (1992) - [j3]Tamar Schlick
TNPACK - a truncated Newton minimization package for large-scale problems: II. Implementation examples. ACM Trans. Math. Softw. 18(1): 71-111 (1992) - [j2]Tamar Schlick, Aaron L. Fogelson:
Algorithm 702: TNPACK-a truncated Newton minimization package for large-scale problems: I. Algorithm and usage. ACM Trans. Math. Softw. 18(2): 141 (1992) - 1991
- [j1]Tamar Schlick
New Approaches to Potential Energy Minimization and Molecular Dynamics Algorithms. Comput. Chem. 15(3): 251-260 (1991)
Coauthor Index
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