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William S. Hlavacek
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2020 – today
- 2022
- [j22]Jacob Neumann, Yen Ting Lin
, Abhishek Mallela
Implementation of a practical Markov chain Monte Carlo sampling algorithm in PyBioNetFit. Bioinform. 38(6): 1770-1772 (2022) - 2020
- [j21]Eshan D. Mitra, William S. Hlavacek
Bayesian inference using qualitative observations of underlying continuous variables. Bioinform. 36(10): 3177-3184 (2020) - [j20]Fengkai Zhang
Systems biology markup language (SBML) level 3 package: multistate, multicomponent and multicompartment species, version 1, release 2. J. Integr. Bioinform. 17(2-3) (2020)
2010 – 2019
- 2019
- [j19]Keesha E. Erickson, Oleksii S. Rukhlenko
Modeling cell line-specific recruitment of signaling proteins to the insulin-like growth factor 1 receptor. PLoS Comput. Biol. 15(1) (2019) - 2018
- [i1]Afroza Shirin, Isaac S. Klickstein, Song Feng, Yen Ting Lin, William S. Hlavacek, Francesco Sorrentino:
Prediction of Optimal Drug Schedules for Controlling Autophagy. CoRR abs/1808.00545 (2018) - 2017
- [j18]Marek Kochanczyk
SPATKIN: a simulator for rule-based modeling of biomolecular site dynamics on surfaces. Bioinform. 33(22): 3667-3669 (2017) - [c3]Ryan Suderman
TRuML: A Translator for Rule-Based Modeling Languages. BCB 2017: 372-377 - 2016
- [j17]Brandon R. Thomas, Lily A. Chylek, Joshua Colvin, Suman Sirimulla, Andrew H. A. Clayton
BioNetFit: a fitting tool compatible with BioNetGen, NFsim and distributed computing environments. Bioinform. 32(5): 798-800 (2016) - 2014
- [j16]Orna Resnekov, Brian Munsky, William S. Hlavacek:
Perspective on the q-bio Summer School and Conference: 2007-2014 and beyond. Quant. Biol. 2(1): 54-58 (2014) - 2013
- [j15]Kristy Nowak-Lovato, Ludmil B. Alexandrov
Binding of Nucleoid-Associated Protein Fis to DNA Is Regulated by DNA Breathing Dynamics. PLoS Comput. Biol. 9(1) (2013) - [j14]Dipak Barua
Modeling the Effect of APC Truncation on Destruction Complex Function in Colorectal Cancer Cells. PLoS Comput. Biol. 9(9) (2013) - 2012
- [j13]Matthew S. Creamer, Edward C. Stites, Meraj Aziz, James A. Cahill, Chin Wee Tan
Specification, annotation, visualization and simulation of a large rule-based model for ERBB receptor signaling. BMC Syst. Biol. 6: 107 (2012) - 2011
- [j12]Fangping Mu, Clifford J. Unkefer, Pat J. Unkefer, William S. Hlavacek
Prediction of metabolic reactions based on atomic and molecular properties of small-molecule compounds. Bioinform. 27(11): 1537-1545 (2011) - [j11]Nathan W. Lemons, Bin Hu, William S. Hlavacek
Hierarchical graphs for rule-based modeling of biochemical systems. BMC Bioinform. 12: 45 (2011) - 2010
- [j10]Joshua Colvin, Michael I. Monine, Ryan N. Gutenkunst, William S. Hlavacek
RuleMonkey: software for stochastic simulation of rule-based models. BMC Bioinform. 11: 404 (2010) - [j9]Amy L. Bauer, William S. Hlavacek
Using Sequence-Specific Chemical and Structural Properties of DNA to Predict Transcription Factor Binding Sites. PLoS Comput. Biol. 6(11) (2010) - [c2]Anu Chaudhary, Geoffrey Waldo, William S. Hlavacek, Chang-Shung Tung:
Systems Biology Approaches for Developing Artificial Pathogen Detection Networks. ALIFE 2010: 93
2000 – 2009
- 2009
- [j8]Joshua Colvin, Michael I. Monine, James R. Faeder
Simulation of large-scale rule-based models. Bioinform. 25(7): 910-917 (2009) - [j7]Bin Hu
GetBonNie for building, analyzing and sharing rule-based models. Bioinform. 25(11): 1457-1460 (2009) - 2007
- [j6]Fangping Mu, Robert F. Williams, Clifford J. Unkefer, Pat J. Unkefer, James R. Faeder
Carbon-fate maps for metabolic reactions. Bioinform. 23(23): 3193-3199 (2007) - 2006
- [j5]Fangping Mu, Pat J. Unkefer, Clifford J. Unkefer, William S. Hlavacek
Prediction of oxidoreductase-catalyzed reactions based on atomic properties of metabolites. Bioinform. 22(24): 3082-3088 (2006) - [j4]Michael L. Blinov, Jin Yang, James R. Faeder, William S. Hlavacek
Graph Theory for Rule-Based Modeling of Biochemical Networks. Trans. Comp. Sys. Biology 7: 89-106 (2006) - 2005
- [j3]James R. Faeder
Rule-based modeling of biochemical networks. Complex. 10(4): 22-41 (2005) - [c1]James R. Faeder
Graphical rule-based representation of signal-transduction networks. SAC 2005: 133-140 - 2004
- [j2]Michael L. Blinov
BioNetGen: software for rule-based modeling of signal transduction based on the interactions of molecular domains. Bioinform. 20(17): 3289-3291 (2004)
1990 – 1999
- 1998
- [j1]William S. Hlavacek, Michael A. Savageau:
Method for determining natural design principles of biological control circuits. J. Intell. Fuzzy Syst. 6(1): 147-160 (1998)
Coauthor Index
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