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Vincent J. Carey
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2020 – today
- 2024
- [j18]Michele Gentili
, Kimberly Glass, Enrico Maiorino, Brian D. Hobbs, Zhonghui Xu, Peter J. Castaldi, Michael H. Cho
Partial correlation network analysis identifies coordinated gene expression within a regional cluster of COPD genome-wide association signals. PLoS Comput. Biol. 20(10): 1011079 (2024) - 2023
- [j17]Kelly B. Eckenrode
Curated single cell multimodal landmark datasets for R/Bioconductor. PLoS Comput. Biol. 19(8) (2023) - 2021
- [j16]Ludwig Geistlinger, Gergely Csaba, Mara Santarelli, Marcel Ramos
Toward a gold standard for benchmarking gene set enrichment analysis. Briefings Bioinform. 22(1): 545-556 (2021)
2010 – 2019
- 2019
- [j15]Rose Du, Vincent J. Carey, Scott T. Weiss:
deconvSeq: deconvolution of cell mixture distribution in sequencing data. Bioinform. 35(24): 5095-5102 (2019) - [i3]Shweta Gopaulakrishnan, Samuela Pollack, BJ Stubbs, Hervé Pagès, John Readey, Sean Davis, Levi Waldron
restfulSE: A semantically rich interface for cloud-scale genomics with Bioconductor. F1000Research 8: 21 (2019) - [i2]Shian Su
BiocPkgTools: Toolkit for mining the Bioconductor package ecosystem. F1000Research 8: 752 (2019) - 2017
- [i1]Benjamin J. Stubbs, Keith Frankston, Marcel Ramos
ogttMetrics: Data structures and algorithms for oral glucose tolerance tests. F1000Research 6: 684- (2017) - 2016
- [j14]Lavanya Kannan, Marcel Ramos
Public data and open source tools for multi-assay genomic investigation of disease. Briefings Bioinform. 17(4): 603-615 (2016) - 2014
- [j13]Valerie Obenchain, Michael F. Lawrence, Vincent J. Carey, Stephanie M. Gogarten
VariantAnnotation: a Bioconductor package for exploration and annotation of genetic variants. Bioinform. 30(14): 2076-2078 (2014) - 2013
- [j12]Michael F. Lawrence, Wolfgang Huber
Software for Computing and Annotating Genomic Ranges. PLoS Comput. Biol. 9(8) (2013) - 2011
- [j11]Jen-hwa Chu
Quantifying differential gene connectivity between disease states for objective identification of disease-relevant genes. BMC Syst. Biol. 5: 89 (2011) - [r1]Robert Gentleman, Wolfgang Huber, Vincent J. Carey:
R Language. International Encyclopedia of Statistical Science 2011: 1159-1161
2000 – 2009
- 2009
- [j10]Adam L. Asare
Power enhancement via multivariate outlier testing with gene expression arrays. Bioinform. 25(1): 48-53 (2009) - [j9]Vincent J. Carey, Adam R. Davis, Michael F. Lawrence, Robert Gentleman, Benjamin A. Raby:
Data structures and algorithms for analysis of genetics of gene expression with Bioconductor: GGtools 3.x. Bioinform. 25(11): 1447-1448 (2009) - [j8]Michael F. Lawrence, Robert Gentleman, Vincent J. Carey:
rtracklayer: an R package for interfacing with genome browsers. Bioinform. 25(14): 1841-1842 (2009) - [j7]Rose Du
Platform dependence of inference on gene-wise and gene-set involvement in human lung development. BMC Bioinform. 10 (2009) - [j6]Jen-hwa Chu
A graphical model approach for inferring large-scale networks integrating gene expression and genetic polymorphism. BMC Syst. Biol. 3: 55 (2009) - [c2]Vincent J. Carey, Robert Gentleman:
Interpreting Genetics Of Gene Expression: Integrative Architecture In Bioconductor. Pacific Symposium on Biocomputing 2009: 380-390 - 2008
- [c1]Vincent J. Carey, Jeff Gentry, Deepayan Sarkar, Robert Gentleman, Srini Ramaswamy:
SGDI: System for Genomic Data Integration. Pacific Symposium on Biocomputing 2008: 141-152 - 2007
- [j5]Vincent J. Carey, Martin Morgan
GGtools: analysis of genetics of gene expression in bioconductor. Bioinform. 23(4): 522-523 (2007) - [j4]Wolfgang Huber
Graphs in molecular biology. BMC Bioinform. 8(S-6) (2007) - [j3]Adi L. Tarca, Vincent J. Carey, Xue-wen Chen, Roberto Romero
Machine Learning and Its Applications to Biology. PLoS Comput. Biol. 3(6) (2007) - 2005
- [j2]Vincent J. Carey, Jeff Gentry, Elizabeth Whalen, Robert Gentleman:
Network structures and algorithms in Bioconductor. Bioinform. 21(1): 135-136 (2005) - 2003
- [j1]Jianhua Zhang, Vincent J. Carey, Robert Gentleman:
An extensible application for assembling annotation for genomic data. Bioinform. 19(1): 155-156 (2003)
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