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Toshiaki Tokimatsu
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2020 – today
- 2020
- [i2]Rutger A. Vos
, Toshiaki Katayama
BioHackathon 2015: Semantics of data for life sciences and reproducible research. F1000Research 9: 136 (2020)
2010 – 2019
- 2019
- [i1]Toshiaki Katayama
BioHackathon series in 2013 and 2014: improvements of semantic interoperability in life science data and services. F1000Research 8: 1677 (2019) - 2016
- [j11]Yuki Moriya, Takuji Yamada, Shujiro Okuda, Zenichi Nakagawa, Masaaki Kotera, Toshiaki Tokimatsu
Identification of Enzyme Genes Using Chemical Structure Alignments of Substrate-Product Pairs. J. Chem. Inf. Model. 56(3): 510-516 (2016) - 2014
- [j10]Masaaki Kotera, Yasuo Tabei, Yoshihiro Yamanishi, Ai Muto, Yuki Moriya
Metabolome-scale prediction of intermediate compounds in multistep metabolic pathways with a recursive supervised approach. Bioinform. 30(12): 165-174 (2014) - [j9]Masaaki Kotera, Yosuke Nishimura
PIERO ontology for analysis of biochemical transformations: Effective implementation of reaction information in the IUBMB enzyme list. J. Bioinform. Comput. Biol. 12(6) (2014) - 2013
- [j8]Masaaki Kotera, Yasuo Tabei, Yoshihiro Yamanishi, Toshiaki Tokimatsu
Supervised de novo reconstruction of metabolic pathways from metabolome-scale compound sets. Bioinform. 29(13): 135-144 (2013) - [j7]Masaaki Kotera, Yasuo Tabei, Yoshihiro Yamanishi, Yuki Moriya
KCF-S: KEGG Chemical Function and Substructure for improved interpretability and prediction in chemical bioinformatics. BMC Syst. Biol. 7(S-6): S2 (2013) - [j6]Ai Muto, Masaaki Kotera, Toshiaki Tokimatsu
Modular Architecture of Metabolic Pathways Revealed by Conserved Sequences of Reactions. J. Chem. Inf. Model. 53(3): 613-622 (2013) - [j5]Akihiro Nakaya, Toshiaki Katayama, Masumi Itoh, Kazushi Hiranuka, Shuichi Kawashima
KEGG OC: a large-scale automatic construction of taxonomy-based ortholog clusters. Nucleic Acids Res. 41(Database-Issue): 353-357 (2013) - 2011
- [j4]Masaaki Kotera, Toshiaki Tokimatsu
MUCHA: multiple chemical alignment algorithm to identify building block substructures of orphan secondary metabolites. BMC Bioinform. 12(S-14): S1 (2011) - [j3]Nozomu Sakurai, Takeshi Ara
KaPPA-View4: a metabolic pathway database for representation and analysis of correlation networks of gene co-expression and metabolite co-accumulation and omics data. Nucleic Acids Res. 39(Database-Issue): 677-684 (2011) - 2010
- [j2]Yuki Moriya
PathPred: an enzyme-catalyzed metabolic pathway prediction server. Nucleic Acids Res. 38(Web-Server-Issue): 138-143 (2010)
2000 – 2009
- 2008
- [j1]Minoru Kanehisa, Michihiro Araki, Susumu Goto, Masahiro Hattori
KEGG for linking genomes to life and the environment. Nucleic Acids Res. 36(Database-Issue): 480-484 (2008)
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