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Edda Klipp
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2020 – today
- 2023
- [j35]Willow Carretero Chavez, Marcus Krantz, Edda Klipp, Irina Kufareva:
kboolnet: a toolkit for the verification, validation, and visualization of reaction-contingency (rxncon) models. BMC Bioinform. 24(1): 246 (2023) - 2022
- [j34]Ulrike Münzner, Tomoya Mori, Marcus Krantz, Edda Klipp, Tatsuya Akutsu:
Identification of periodic attractors in Boolean networks using a priori information. PLoS Comput. Biol. 18(1) (2022) - 2021
- [j33]Jorin Diemer, Jens Hahn, Björn Goldenbogen, Karin Müller, Edda Klipp:
Sperm migration in the genital tract - In silico experiments identify key factors for reproductive success. PLoS Comput. Biol. 17(7) (2021) - 2020
- [j32]Stephan O. Adler, Edda Klipp:
Chemical Reaction Networks Possess Intrinsic, Temperature-Dependent Functionality. Entropy 22(1): 117 (2020) - [j31]Maria Krantz, Edda Klipp:
Moonlighting proteins - an approach to systematize the concept. Silico Biol. 13(3-4): 71-83 (2020)
2010 – 2019
- 2019
- [j30]Andrea Auconi, Andrea Giansanti, Edda Klipp:
Information Thermodynamics for Time Series of Signal-Response Models. Entropy 21(2): 177 (2019) - 2018
- [j29]Wolfgang Giese, Gregor Milicic, Andreas Schröder, Edda Klipp:
Spatial modeling of the membrane-cytosolic interface in protein kinase signal transduction. PLoS Comput. Biol. 14(4) (2018) - [j28]Arturo Blazquez-Navarro, Thomas Schachtner, Ulrik Stervbo, Anett Sefrin, Maik Stein, Timm H. Westhoff, Petra Reinke, Edda Klipp, Nina Babel, Avidan U. Neumann, Michal Or-Guil:
Differential T cell response against BK virus regulatory and structural antigens: A viral dynamics modelling approach. PLoS Comput. Biol. 14(5) (2018) - 2016
- [j27]Timo Lubitz, Jens Hahn, Frank T. Bergmann, Elad Noor, Edda Klipp, Wolfram Liebermeister:
SBtab: a flexible table format for data exchange in systems biology. Bioinform. 32(16): 2559-2561 (2016) - [j26]Katarzyna M. Tyc, Sanna E. Herwald, Jennifer A. Hogan, Jessica V. Pierce, Edda Klipp, Carol A. Kumamoto:
The game theory of Candida albicans colonization dynamics reveals host status-responsive gene expression. BMC Syst. Biol. 10: 20 (2016) - [j25]Josch Pauling, Edda Klipp:
Computational Lipidomics and Lipid Bioinformatics: Filling In the Blanks. J. Integr. Bioinform. 13(1) (2016) - [j24]Susanne Gerber, Martina Fröhlich, Hella Lichtenberg-Fraté, Sergey Shabala, Lana Shabala, Edda Klipp:
A Thermodynamic Model of Monovalent Cation Homeostasis in the Yeast Saccharomyces cerevisiae. PLoS Comput. Biol. 12(1) (2016) - [j23]Max Schelker, Caroline Maria Mair, Fabian Jolmes, Robert-William Welke, Edda Klipp, Andreas Herrmann, Max Flöttmann, Christian Sieben:
Viral RNA Degradation and Diffusion Act as a Bottleneck for the Influenza A Virus Infection Efficiency. PLoS Comput. Biol. 12(10) (2016) - 2015
- [j22]Andreas Raue, Bernhard Steiert, Max Schelker, Clemens Kreutz, Tim Maiwald, Helge Hass, Joep Vanlier, Christian Tönsing, Lorenz Adlung, Raphael Engesser, Wolfgang Mader, Tim Heinemann, Jan Hasenauer, Marcel Schilling, Thomas Höfer, Edda Klipp, Fabian J. Theis, Ursula Klingmüller, Birgit Schoeberl, Jens Timmer:
Data2Dynamics: a modeling environment tailored to parameter estimation in dynamical systems. Bioinform. 31(21): 3558-3560 (2015) - [j21]Tomoya Mori, Max Flöttmann, Marcus Krantz, Tatsuya Akutsu, Edda Klipp:
Stochastic simulation of Boolean rxncon models: towards quantitative analysis of large signaling networks. BMC Syst. Biol. 9: 45 (2015) - [j20]Thomas W. Spiesser, Clemens Kühn, Marcus Krantz, Edda Klipp:
Bud-Localization of CLB2 mRNA Can Constitute a Growth Rate Dependent Daughter Sizer. PLoS Comput. Biol. 11(4) (2015) - 2014
- [j19]Matthias Bock, Till Scharp, Chaitanya Talnikar, Edda Klipp:
BooleSim: an interactive Boolean network simulator. Bioinform. 30(1): 131-132 (2014) - [j18]Max Flöttmann, Jannis Uhlendorf, Till Scharp, Edda Klipp, Thomas W. Spiesser:
SensA: web-based sensitivity analysis of SBML models. Bioinform. 30(19): 2830-2831 (2014) - [j17]Gundián M. de Hijas-Liste, Edda Klipp, Eva Balsa-Canto, Julio R. Banga:
Global dynamic optimization approach to predict activation in metabolic pathways. BMC Syst. Biol. 8: 1 (2014) - [j16]Christian Diener, Gabriele Schreiber, Wolfgang Giese, Gabriel del Rio, Andreas Schröder, Edda Klipp:
Yeast Mating and Image-Based Quantification of Spatial Pattern Formation. PLoS Comput. Biol. 10(6) (2014) - 2013
- [j15]Falko Krause, Marvin Schulz, Ben Ripkens, Max Flöttmann, Marcus Krantz, Edda Klipp, Thomas Handorf:
Biographer: web-based editing and rendering of SBGN compliant biochemical networks. Bioinform. 29(11): 1467-1468 (2013) - [j14]Max Flöttmann, Falko Krause, Edda Klipp, Marcus Krantz:
Reaction-contingency based bipartite Boolean modelling. BMC Syst. Biol. 7: 58 (2013) - [j13]Elzbieta Petelenz-Kurdziel, Clemens Kühn, Bodil Nordlander, Dagmara Klein, Kuk-Ki Hong, Therese Jacobson, Peter Dahl, Jörg Schaber, Jens Nielsen, Stefan Hohmann, Edda Klipp:
Quantitative Analysis of Glycerol Accumulation, Glycolysis and Growth under Hyper Osmotic Stress. PLoS Comput. Biol. 9(6) (2013) - 2012
- [j12]Thomas Handorf, Edda Klipp:
Modeling mechanistic biological networks: An advanced Boolean approach. Bioinform. 28(4): 557-563 (2012) - [j11]Marvin Schulz, Edda Klipp, Wolfram Liebermeister:
Propagating semantic information in biochemical network models. BMC Bioinform. 13: 18 (2012) - 2011
- [j10]Szymon Stoma, Martina Fröhlich, Susanne Gerber, Edda Klipp:
STSE: Spatio-Temporal Simulation Environment Dedicated to Biology. BMC Bioinform. 12: 126 (2011) - [j9]Dagmar Waltemath, Richard R. Adams, Daniel A. Beard, Frank T. Bergmann, Upinder S. Bhalla, Randall Britten, Vijayalakshmi Chelliah, Mike T. Cooling, Jonathan Cooper, Edmund J. Crampin, Alan Garny, Stefan Hoops, Michael Hucka, Peter J. Hunter, Edda Klipp, Camille Laibe, Andrew K. Miller, Ion I. Moraru, David P. Nickerson, Poul M. F. Nielsen, Macha Nikolski, Sven Sahle, Herbert M. Sauro, Henning Schmidt, Jacky L. Snoep, Dominic P. Tolle, Olaf Wolkenhauer, Nicolas Le Novère:
Minimum Information About a Simulation Experiment (MIASE). PLoS Comput. Biol. 7(4) (2011) - 2010
- [j8]Falko Krause, Jannis Uhlendorf, Timo Lubitz, Marvin Schulz, Edda Klipp, Wolfram Liebermeister:
Annotation and merging of SBML models with semanticSBML. Bioinform. 26(3): 421-422 (2010) - [j7]Wolfram Liebermeister, Jannis Uhlendorf, Edda Klipp:
Modular rate laws for enzymatic reactions: thermodynamics, elasticities and implementation. Bioinform. 26(12): 1528-1534 (2010)
2000 – 2009
- 2009
- [b1]Edda Klipp, Wolfram Liebermeister, Christoph K. Wierling, Axel Kowald, Hans Lehrach:
Systems Biology - a Textbook. Wiley 2009, ISBN 978-3-527-31874-2, pp. I-XXI, 1-569 - [j6]Roberta Alfieri, Matteo Barberis, Ferdinando Chiaradonna, Daniela Gaglio, Luciano Milanesi, Marco Vanoni, Edda Klipp, Lilia Alberghina:
Towards a systems biology approach to mammalian cell cycle: modeling the entrance into S phase of quiescent fibroblasts after serum stimulation. BMC Bioinform. 10(S-12): 16 (2009) - [j5]Marvin Schulz, Barbara M. Bakker, Edda Klipp:
TIde: a software for the systematic scanning of drug targets in kinetic network models. BMC Bioinform. 10: 344 (2009) - [j4]Clemens Kühn, Christoph K. Wierling, Alexander Kühn, Edda Klipp, Georgia Panopoulou, Hans Lehrach, Albert J. Poustka:
Monte Carlo analysis of an ODE Model of the Sea Urchin Endomesoderm Network. BMC Syst. Biol. 3: 83 (2009) - 2008
- [j3]Zhike Zi, Yanan Zheng, Ann E. Rundell, Edda Klipp:
SBML-SAT: a systems biology markup language (SBML) based sensitivity analysis tool. BMC Bioinform. 9 (2008) - 2007
- [j2]Matteo Barberis, Edda Klipp, Marco Vanoni, Lilia Alberghina:
Cell Size at S Phase Initiation: An Emergent Property of the G1/S Network. PLoS Comput. Biol. 3(4) (2007) - 2006
- [j1]Zhike Zi, Edda Klipp:
SBML-PET: a Systems Biology Markup Language-based parameter estimation tool. Bioinform. 22(21): 2704-2705 (2006)
Coauthor Index
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last updated on 2024-10-07 21:18 CEST by the dblp team
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