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Justin Elser
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2020 – today
- 2023
- [j10]Jennifer L. Clarke
, Laurel D. Cooper
Data sharing and ontology use among agricultural genetics, genomics, and breeding databases and resources of the Agbiodata Consortium. Database J. Biol. Databases Curation 2023 (2023) - [j9]Anne E. Thessen, Laurel Cooper, Tyson L. Swetnam, Harshad Hegde, Justin T. Reese, Justin Elser, Pankaj Jaiswal
Using knowledge graphs to infer gene expression in plants. Frontiers Artif. Intell. 6 (2023) - [i1]Jennifer L. Clarke, Laurel D. Cooper, Monica F. Poelchau, Tanya Z. Berardini, Justin Elser, Andrew D. Farmer, Stephen P. Ficklin, Sunita Kumari, Marie-Angélique Laporte, Rex T. Nelson, Rie Sadohara, Peter Selby, Anne E. Thessen, Brandon Whitehead
Data sharing and ontology use among agricultural genetics, genomics, and breeding databases and resources of the AgBioData Consortium. CoRR abs/2307.08958 (2023) - 2022
- [j8]Andrew D. Yates
Ensembl Genomes 2022: an expanding genome resource for non-vertebrates. Nucleic Acids Res. 50(D1): 996-1003 (2022) - 2021
- [j7]Marcela K. Tello-Ruiz
Gramene 2021: harnessing the power of comparative genomics and pathways for plant research. Nucleic Acids Res. 49(Database-Issue): D1452-D1463 (2021) - [j6]Seth Carbon, Eric Douglass, Benjamin M. Good, Deepak R. Unni
The Gene Ontology resource: enriching a GOld mine. Nucleic Acids Res. 49(Database-Issue): D325-D334 (2021) - 2020
- [j5]Sushma Naithani
Plant Reactome: a knowledgebase and resource for comparative pathway analysis. Nucleic Acids Res. 48(Database-Issue): D1093-D1103 (2020) - [c10]Laurel Cooper, Marie-Angélique Laporte, Justin Elser, Victoria Carollo Blake, Taner Z. Sen, Chris Mungall, Elizabeth Arnaud, Pankaj Jaiswal:
The Plant Trait Ontology Links Wheat Traits for Crop Improvement and Genomics (short paper). ICBO/ODLS 2020: 1-2
2010 – 2019
- 2018
- [j4]Laurel Cooper, Austin Meier, Marie-Angélique Laporte
The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics. Nucleic Acids Res. 46(Database-Issue): D1168-D1180 (2018) - [j3]Marcela K. Tello-Ruiz, Sushma Naithani
Gramene 2018: unifying comparative genomics and pathway resources for plant research. Nucleic Acids Res. 46(Database-Issue): D1181-D1189 (2018) - [c9]Austin Meier, Marie-Angélique Laporte, Justin Elser, Laurel Cooper, Justin Preece, Pankaj Jaiswal, Jorrit H. Poelen:
OOPS: The Ontology of Plant Stress, A Semi-Automated Standardization Methodology. ICBO 2018 - [c8]Dimitrios Trigkakis, Justin Preece, Austin Meier, Justin Elser, Kristian Kvilekval, Dmitry V. Fedorov, B. S. Manjunath, Pankaj Jaiswal, Sinisa Todorovic:
Planteome & BisQue: Automating Image Annotation with Ontologies using Deep-Learning Networks. ICBO 2018 - 2017
- [j2]Sushma Naithani
Plant Reactome: a resource for plant pathways and comparative analysis. Nucleic Acids Res. 45(Database-Issue): D1029-D1039 (2017) - [c7]Botong Qu, Prashant Kumar, Eugene Zhang, Pankaj Jaiswal, Laurel Cooper, Justin Elser, Yue Zhang:
Interactive design and visualization of N-ary relationships. SIGGRAPH Asia Symposium on Visualization 2017: 15:1-15:8 - 2016
- [j1]Marcela K. Tello-Ruiz, Joshua C. Stein
Gramene 2016: comparative plant genomics and pathway resources. Nucleic Acids Res. 44(Database-Issue): 1133-1140 (2016) - [c6]Laurel Cooper, Austin Meier, Justin Elser, Justin Preece, Xu Xu, Ryan Kitchen, Botong Qu, Eugene Zhang, Sinisa Todorovic, Pankaj Jaiswal, Marie-Angélique Laporte, Elizabeth Arnaud, Seth Carbon, Chris Mungall, Barry Smith, Georgios V. Gkoutos, John H. Doonan:
The Planteome Project. ICBO/BioCreative 2016 - [c5]Austin Meier, Laurel Cooper, Justin Elser, Pankaj Jaiswal, Marie-Angélique Laporte:
Annotating Germplasm to Planteome Reference Ontologies. ICBO/BioCreative 2016 - [c4]Justin Preece, Justin Elser, Pankaj Jaiswal, Kristian Kvilekval, Dmitry V. Fedorov, B. S. Manjunath, Ryan Kitchen, Xu Xu, Dmitrios Trigkakis, Sinisa Todorovic, Seth Carbon:
Plant Image Segmentation and Annotation with Ontologies in BisQue. ICBO/BioCreative 2016 - [c3]Botong Qu, Jaden Diefenbaugh, Eugene Zhang, Justin Elser, Pankaj Jaiswal, Seth Carbon, Christopher J. Mungall:
Planteome Gene Annotation Enrichment Analysis. ICBO/BioCreative 2016 - 2012
- [c2]Ramona L. Walls, Barry Smith, Justin Elser, Albert Goldfain, Dennis W. Stevenson, Pankaj Jaiswal:
A plant disease extension of the Infectious Disease Ontology. ICBO 2012 - 2011
- [c1]Justin Preece, Justin Elser, Pankaj Jaiswal:
Planteome annotation wiki: a semantic application for the community curation of plant genotypes and phenotypes. SWAT4LS 2011: 96-97
Coauthor Index
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