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Ludovic Cottret
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2020 – today
- 2021
- [c3]Kerian Thuillier, Caroline Baroukh, Alexander Bockmayr
, Ludovic Cottret
Learning Boolean Controls in Regulated Metabolic Networks: A Case-Study. CMSB 2021: 159-180
2010 – 2019
- 2018
- [j14]Maxime Chazalviel
MetExploreViz: web component for interactive metabolic network visualization. Bioinform. 34(2): 312-313 (2018) - [j13]Ludovic Cottret
MetExplore: collaborative edition and exploration of metabolic networks. Nucleic Acids Res. 46(Webserver-Issue): W495-W502 (2018) - 2015
- [j12]Lucas Marmiesse
FlexFlux: combining metabolic flux and regulatory network analyses. BMC Syst. Biol. 9: 93 (2015) - [j11]Sanu Shameer, Flora J. Logan-Klumpler, Florence Vinson, Ludovic Cottret
TrypanoCyc: a community-led biochemical pathways database for Trypanosoma brucei. Nucleic Acids Res. 43(Database-Issue): 637-644 (2015) - 2014
- [j10]Paulo Vieira Milreu, Cecilia Coimbra Klein, Ludovic Cottret
Telling metabolic stories to explore metabolomics data: a case study on the yeast response to cadmium exposure. Bioinform. 30(1): 61-70 (2014) - [j9]Mehdi Khafif, Ludovic Cottret
Identification and phylogenetic analyses of VASt, an uncharacterized protein domain associated with lipid-binding domains in Eukaryotes. BMC Bioinform. 15: 222 (2014) - 2012
- [j8]Vicente Acuña, Paulo Vieira Milreu, Ludovic Cottret
Algorithms and complexity of enumerating minimal precursor sets in genome-wide metabolic networks. Bioinform. 28(19): 2474-2483 (2012) - [j7]Vicente Acuña, Etienne Birmelé, Ludovic Cottret
Telling stories: Enumerating maximal directed acyclic graphs with a constrained set of sources and targets. Theor. Comput. Sci. 457: 1-9 (2012) - [c2]Jonathan Dubois, Ludovic Cottret
Systrip: A Visual Environment for the Investigation of Time-series Data in the Context of Metabolic Networks. IV 2012: 204-213 - 2011
- [j6]Augusto F. Vellozo, Amélie S. Véron, Patrice Baa-Puyoulet, Jaime Huerta-Cepas
CycADS: an annotation database system to ease the development and update of BioCyc databases. Database J. Biol. Databases Curation 2011 (2011) - 2010
- [j5]Ludovic Cottret
MetExplore: a web server to link metabolomic experiments and genome-scale metabolic networks. Nucleic Acids Res. 38(Web-Server-Issue): 132-137 (2010) - [j4]Ludovic Cottret
Graph-Based Analysis of the Metabolic Exchanges between Two Co-Resident Intracellular Symbionts, Baumannia cicadellinicola and Sulcia muelleri, with Their Insect Host, Homalodisca coagulata. PLoS Comput. Biol. 6(9) (2010)
2000 – 2009
- 2009
- [j3]Franck Picard
Deciphering the connectivity structure of biological networks using MixNet. BMC Bioinform. 10(S-6) (2009) - 2008
- [j2]Vincent Lacroix, Ludovic Cottret
An Introduction to Metabolic Networks and Their Structural Analysis. IEEE ACM Trans. Comput. Biol. Bioinform. 5(4): 594-617 (2008) - [c1]Ludovic Cottret, Paulo Vieira Milreu, Vicente Acuña, Alberto Marchetti-Spaccamela
Enumerating Precursor Sets of Target Metabolites in a Metabolic Network. WABI 2008: 233-244 - 2007
- [j1]Romain Bourqui
Metabolic network visualization eliminating node redundance and preserving metabolic pathways. BMC Syst. Biol. 1: 29 (2007)
Coauthor Index
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