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Matthew T. Weirauch
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2020 – today
- 2023
- [j7]Tareian A. Cazares
, Faiz W. Rizvi, Balaji Iyer, Xiaoting Chen, Michael Kotliar
maxATAC: Genome-scale transcription-factor binding prediction from ATAC-seq with deep neural networks. PLoS Comput. Biol. 19(1) (2023)
2010 – 2019
- 2015
- [c3]Sumit B. Makashir, Leah C. Kottyan, Matthew T. Weirauch:
Meta-Analysis of Differential Gene Co-Expression: Application to Lupus. Pacific Symposium on Biocomputing 2015: 443-454 - [i1]Thomas Cokelaer
DREAMTools: a Python package for scoring collaborative challenges. F1000Research 4: 1030 (2015) - 2013
- [j6]Debashish Ray, Hilal Kazan, Kate B. Cook, Matthew T. Weirauch, Hamed S. Najafabadi
A compendium of RNA-binding motifs for decoding gene regulation. Nat. 499(7457): 172-177 (2013)
2000 – 2009
- 2008
- [j5]Matthew T. Weirauch, Christopher K. Wong, Alexandra B. Byrne
Information-based methods for predicting gene function from systematic gene knock-downs. BMC Bioinform. 9 (2008) - [j4]George E. Liu
Identification of Conserved Regulatory Elements in Mammalian Promoter Regions: A Case Study Using the PCK1 Promoter. Genom. Proteom. Bioinform. 6(3-4): 129-143 (2008) - 2007
- [j3]Chunnuan Chen, Matthew T. Weirauch, Corey Powell, Alexander C. Zambon, Joshua M. Stuart
A search engine to identify pathway genes from expression data on multiple organisms. BMC Syst. Biol. 1: 20 (2007) - 2006
- [c2]Firas Khatib, Matthew T. Weirauch, Carol A. Rohl:
Rapid knot detection and application to protein structure prediction. ISMB (Supplement of Bioinformatics) 2006: 258-259 - 2005
- [j2]Laura Elnitski
Improvements to GALA and dbERGE II: databases featuring genomic sequence alignment, annotation and experimental results. Nucleic Acids Res. 33(Database-Issue): 466-470 (2005) - [c1]Matthew T. Weirauch, Joshua M. Stuart:
Discovering Functional Transcription Factor Binding from Superimposed Gene Networks. CSB Workshops 2005: 178-179 - 2003
- [j1]Scott Schwartz, Laura Elnitski
MultiPipMaker and supporting tools: alignments and analysis of multiple genomic DNA sequences. Nucleic Acids Res. 31(13): 3518-3524 (2003)
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