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Marnix H. Medema
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2020 – today
- 2024
- [j28]David Meijer, Marnix H. Medema, Justin J. J. van der Hooft
:
CineMol: a programmatically accessible direct-to-SVG 3D small molecule drawer. J. Cheminformatics 16(1): 58 (2024) - [j27]Barbara R. Terlouw, Friederike Biermann, Sophie P. J. M. Vromans, Elham Zamani, Eric J. N. Helfrich, Marnix H. Medema:
RAIChU: automating the visualisation of natural product biosynthesis. J. Cheminformatics 16(1): 106 (2024) - 2023
- [j26]Matthias van den Belt, Cameron L. M. Gilchrist, Thomas J. Booth, Yit-Heng Chooi
CAGECAT: The CompArative GEne Cluster Analysis Toolbox for rapid search and visualisation of homologous gene clusters. BMC Bioinform. 24(1): 181 (2023) - [j25]Barbara R. Terlouw
MIBiG 3.0: a community-driven effort to annotate experimentally validated biosynthetic gene clusters. Nucleic Acids Res. 51(D1): 603-610 (2023) - [j24]Kai Blin
antiSMASH 7.0: new and improved predictions for detection, regulation, chemical structures and visualisation. Nucleic Acids Res. 51(W1): 46-50 (2023) - [j23]Joris J. R. Louwen
iPRESTO: Automated discovery of biosynthetic sub-clusters linked to specific natural product substructures. PLoS Comput. Biol. 19(2) (2023) - 2022
- [j22]Barbara R. Terlouw, Sophie P. J. M. Vromans, Marnix H. Medema
PIKAChU: a Python-based informatics kit for analysing chemical units. J. Cheminformatics 14(1): 34 (2022) - 2021
- [j21]Fidele Ntie-Kang
Computational Applications in Secondary Metabolite Discovery (CAiSMD): an online workshop. J. Cheminformatics 13(1): 64 (2021) - [j20]Satria A. Kautsar
BiG-FAM: the biosynthetic gene cluster families database. Nucleic Acids Res. 49(Database-Issue): D490-D497 (2021) - [j19]Kai Blin
The antiSMASH database version 3: increased taxonomic coverage and new query features for modular enzymes. Nucleic Acids Res. 49(Database-Issue): D639-D643 (2021) - [j18]Kai Blin
antiSMASH 6.0: improving cluster detection and comparison capabilities. Nucleic Acids Res. 49(Webserver-Issue): 29-35 (2021) - [j17]Victòria Pascal Andreu, Jorge Roel-Touris, Dylan Dodd
The gutSMASH web server: automated identification of primary metabolic gene clusters from the gut microbiota. Nucleic Acids Res. 49(Webserver-Issue): 263-270 (2021) - 2020
- [j16]Yan Wang, Miguel Correa Marrero
Coevolution-based prediction of protein-protein interactions in polyketide biosynthetic assembly lines. Bioinform. 36(19): 4846-4853 (2020) - [j15]Satria A. Kautsar
MIBiG 2.0: a repository for biosynthetic gene clusters of known function. Nucleic Acids Res. 48(Database-Issue): D454-D458 (2020) - [j14]Mehmet Direnç Mungan, Mohammad Alanjary
ARTS 2.0: feature updates and expansion of the Antibiotic Resistant Target Seeker for comparative genome mining. Nucleic Acids Res. 48(Webserver-Issue): W546-W552 (2020)
2010 – 2019
- 2019
- [j13]Kai Blin
Recent development of antiSMASH and other computational approaches to mine secondary metabolite biosynthetic gene clusters. Briefings Bioinform. 20(4): 1103-1113 (2019) - [j12]Kai Blin
The antiSMASH database version 2: a comprehensive resource on secondary metabolite biosynthetic gene clusters. Nucleic Acids Res. 47(Database-Issue): D625-D630 (2019) - [j11]Kai Blin
antiSMASH 5.0: updates to the secondary metabolite genome mining pipeline. Nucleic Acids Res. 47(Webserver-Issue): W81-W87 (2019) - 2017
- [j10]Marc G. Chevrette
SANDPUMA: ensemble predictions of nonribosomal peptide chemistry reveal biosynthetic diversity across Actinobacteria. Bioinform. 33(20): 3202-3210 (2017) - [j9]Kai Blin
The antiSMASH database, a comprehensive database of microbial secondary metabolite biosynthetic gene clusters. Nucleic Acids Res. 45(Database-Issue): D555-D559 (2017) - [j8]Kai Blin
antiSMASH 4.0 - improvements in chemistry prediction and gene cluster boundary identification. Nucleic Acids Res. 45(Webserver-Issue): W36-W41 (2017) - [j7]Satria A. Kautsar
plantiSMASH: automated identification, annotation and expression analysis of plant biosynthetic gene clusters. Nucleic Acids Res. 45(Webserver-Issue): W55-W63 (2017) - 2015
- [j6]Tilmann Weber
antiSMASH 3.0 - a comprehensive resource for the genome mining of biosynthetic gene clusters. Nucleic Acids Res. 43(Webserver-Issue): W237-W243 (2015) - 2014
- [j5]Marnix H. Medema
Pep2Path: Automated Mass Spectrometry-Guided Genome Mining of Peptidic Natural Products. PLoS Comput. Biol. 10(9) (2014) - [j4]Marnix H. Medema
A Systematic Computational Analysis of Biosynthetic Gene Cluster Evolution: Lessons for Engineering Biosynthesis. PLoS Comput. Biol. 10(12) (2014) - 2013
- [j3]Kai Blin
antiSMASH 2.0 - a versatile platform for genome mining of secondary metabolite producers. Nucleic Acids Res. 41(Webserver-Issue): 204-212 (2013) - 2011
- [j2]Marnix H. Medema
antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences. Nucleic Acids Res. 39(Web-Server-Issue): 339-346 (2011) - [j1]Marc Röttig, Marnix H. Medema
NRPSpredictor2 - a web server for predicting NRPS adenylation domain specificity. Nucleic Acids Res. 39(Web-Server-Issue): 362-367 (2011)
Coauthor Index
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