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8. DNA 2002: Sapporo, Japan
- Masami Hagiya, Azuma Ohuchi:
DNA Computing, 8th International Workshop on DNA Based Computers, DNA8, Sapporo, Japan, June 10-13, 2002, Revised Papers. Lecture Notes in Computer Science 2568, Springer 2003, ISBN 3-540-00531-5
Self-assembly and Autonomous Molecular Computation
- Phiset Sa-Ardyen, Natasa Jonoska, Nadrian C. Seeman:
Self-assembling DNA Graphs. 1-9 - Dage Liu, John H. Reif, Thomas H. LaBean:
DNA Nanotubes: Construction and Characterization of Filaments Composed of TX-tile Lattice. 10-21 - John H. Reif:
The Design of Autonomous DNA Nanomechanical Devices: Walking and Rolling DNA. 22-37 - Daisuke Matsuda, Masayuki Yamamura:
Cascading Whiplash PCR with a Nicking Enzyme. 38-46
Molecular Evolution and Application to Biotechnology
- John A. Rose, Mitsunori Takano, Akira Suyama:
A PNA-mediated Whiplash PCR-based Program for In Vitro Protein Evolution. 47-60 - Subhayu Basu, David K. Karig
, Ron Weiss:
Engineering Signal Processing in Cells: Towards Molecular Concentration Band Detection. 61-72
Applications to Mathematical Problems
- Ji Youn Lee
Temperature Gradient-Based DNA Computing for Graph Problems with Weighted Edges. 73-84 - Yoichi Takenaka, Akihiro Hashimoto:
Shortening the Computational Time of the Fluorescent DNA Computing. 85-94 - Pilar de la Torre:
How Efficiently Can Room at the Bottom Be Traded Away for Speed at the Top? 95-111 - Satoshi Kashiwamura, Masahito Yamamoto, Atsushi Kameda, Toshikazu Shiba, Azuma Ohuchi:
Hierarchical DNA Memory Based on Nested PCR. 112-123 - Rana Barua, Janardan Misra:
Binary Arithmetic for DNA Computers. 124-132 - Hubert Hug, Rainer Schuler:
Implementation of a Random Walk Method for Solving 3-SAT on Circular DNA Molecules. 133-142 - Hee-Woong Lim, Ji-Eun Yun, Hae-Man Jang, Young-Gyu Chai, Suk-In Yoo, Byoung-Tak Zhang:
Version Space Learning with DNA Molecules. 143-155 - In-Hee Lee
DNA Implementation of Theorem Proving with Resolution Refutation in Propositional Logic. 156-167 - David Harlan Wood, Catherine L. Taylor Clelland, F. Carter Bancroft:
Universal Biochip Readout of Directed Hamiltonian Path Problems. 168-181
Nucleic Acid Sequence Design
- Mirela Andronescu, Danielle Dees, Laura Slaybaugh, Yinglei Zhao, Anne Condon, Barry Cohen, Steven Skiena:
Algorithms for Testing That Sets of DNA Words Concatenate without Secondary Structure. 182-195 - Russell J. Deaton, Junghuei Chen, Hong Bi, Max H. Garzon, Harvey Rubin, David Harlan Wood:
A PCR-based Protocol for In Vitro Selection of Non-crosshybridizing Oligonucleotides. 196-204 - Satoshi Kobayashi, Tomohiro Kondo, Masanori Arita:
On Template Method for DNA Sequence Design. 205-214 - Christine E. Heitsch, Anne Condon, Holger H. Hoos:
From RNA Secondary Structure to Coding Theory: A Combinatorial Approach. 215-228 - Dan C. Tulpan
Stochastic Local Search Algorithms for DNA Word Design. 229-241 - Dongmin Kim, Soo-Yong Shin, In-Hee Lee
NACST/Seq: A Sequence Design System with Multiobjective Optimization. 242-251 - Russell J. Deaton, Junghuei Chen, Hong Bi, John A. Rose:
A Software Tool for Generating Non-crosshybridizing Libraries of DNA Oligonucleotides. 252-261
Theory
- Tom Head, Dennis Pixton, Elizabeth Goode:
Splicing Systems: Regularity and Below. 262-268 - Akihiro Takahara, Takashi Yokomori:
On the Computational Power of Insertion-Deletion Systems. 269-280 - Mihai Ionescu, Carlos Martín-Vide, Andrei Paun, Gheorghe Paun:
Unexpected Universality Results for Three Classes of P Systems with Symport/Antiport. 281-290 - Pierluigi Frisco, Sungchul Ji:
Conformons-P Systems. 291-301 - Daniela Besozzi, Claudio Ferretti
Parallel Rewriting P Systems with Deadlock. 302-314 - Yasubumi Sakakibara, Hiroshi Imai:
A DNA-based Computational Model Using a Specific Type of Restriction Enzyme. 315-325 - Maurice Margenstern, Yurii Rogozhin, Sergey Verlan
Time-Varying Distributed H Systems of Degree 2 Can Carry Out Parallel Computations. 326-336
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