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Pierre R. Bushel
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2010 – 2019
- 2017
- [j13]Brian D. Bennett, Pierre R. Bushel:
goSTAG: gene ontology subtrees to tag and annotate genes within a set. Source Code Biol. Medicine 12(1): 6 (2017) - 2013
- [j12]ClarLynda R. Williams-DeVane
, David M. Reif
Decision tree-based method for integrating gene expression, demographic, and clinical data to determine disease endotypes. BMC Syst. Biol. 7: 119 (2013)
2000 – 2009
- 2009
- [j11]Pierre R. Bushel, Nicholas A. Heard, Roee Gutman, Liwen Liu, Shyamal D. Peddada
Dissecting the fission yeast regulatory network reveals phase-specific control elements of its cell cycle. BMC Syst. Biol. 3: 93 (2009) - [j10]Pierre R. Bushel:
Clustering of Gene Expression Data and End-Point Measurements by Simulated Annealing. J. Bioinform. Comput. Biol. 7(1): 193-215 (2009) - 2008
- [j9]Michael D. Waters
CEBS - Chemical Effects in Biological Systems: a public data repository integrating study design and toxicity data with microarray and proteomics data. Nucleic Acids Res. 36(Database-Issue): 892-900 (2008) - 2007
- [j8]Jeff W. Chou, Tong Zhou, William K. Kaufmann, Richard S. Paules
Extracting gene expression patterns and identifying co-expressed genes from microarray data reveals biologically responsive processes. BMC Bioinform. 8 (2007) - [j7]Pierre R. Bushel, Russell D. Wolfinger, Greg Gibson:
Simultaneous clustering of gene expression data with clinical chemistry and pathological evaluations reveals phenotypic prototypes. BMC Syst. Biol. 1: 15 (2007) - 2006
- [j6]Elo Leung, Pierre R. Bushel:
PAGE: phase-shifted analysis of gene expression. Bioinform. 22(3): 367-368 (2006) - [j5]Sandhya Xirasagar, Scott F. Gustafson, Cheng-Cheng Huang, Qinyan Pan, Jennifer Fostel, Paul Boyer, B. Alex Merrick, Kenneth B. Tomer, Denny D. Chan, Kenneth J. Yost III, Danielle Choi, Nianqing Xiao, Stanley Stasiewicz, Pierre R. Bushel, Michael D. Waters
Chemical effects in biological systems (CEBS) object model for toxicology data, SysTox-OM: design and application. Bioinform. 22(7): 874-882 (2006) - 2005
- [j4]Jeff W. Chou, Richard S. Paules
Systematic Variation Normalization in Microarray Data to Get Gene Expression Comparison Unbiased. J. Bioinform. Comput. Biol. 3(2): 225-242 (2005) - 2002
- [j3]Pierre R. Bushel, Hisham Hamadeh, Lee Bennett
Computational selection of distinct class- and subclass-specific gene expression signatures. J. Biomed. Informatics 35(3): 160-170 (2002) - 2001
- [j2]Pierre R. Bushel, Hisham Hamadeh, Lee Bennett
MAPS: a microarray project system for gene expression experiment information and data validation. Bioinform. 17(6): 564-565 (2001) - [j1]Russell D. Wolfinger, Greg Gibson, Elizabeth D. Wolfinger, Lee Bennett
Assessing Gene Significance from cDNA Microarray Expression Data via Mixed Models. J. Comput. Biol. 8(6): 625-637 (2001)
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