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Duygu Ucar
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2020 – today
- 2021
- [j8]Asa Thibodeau
, Shubham Khetan, Alper Eroglu
CoRE-ATAC: A deep learning model for the functional classification of regulatory elements from single cell and bulk ATAC-seq data. PLoS Comput. Biol. 17(12) (2021) - 2020
- [j7]Nathan Lawlor
V-SVA: an R Shiny application for detecting and annotating hidden sources of variation in single-cell RNA-seq data. Bioinform. 36(11): 3582-3584 (2020)
2010 – 2019
- 2016
- [j6]Asa Thibodeau, Eladio J. Márquez, Oscar Luo
QuIN: A Web Server for Querying and Visualizing Chromatin Interaction Networks. PLoS Comput. Biol. 12(6) (2016) - 2010
- [j5]Hiram A. Firpi, Duygu Ucar, Kai Tan
Discover regulatory DNA elements using chromatin signatures and artificial neural network. Bioinform. 26(13): 1579-1586 (2010) - [c6]Venu Satuluri, Srinivasan Parthasarathy
Markov clustering of protein interaction networks with improved balance and scalability. BCB 2010: 247-256 - [p1]Srinivasan Parthasarathy, Shirish Tatikonda, Duygu Ucar:
A Survey of Graph Mining Techniques for Biological Datasets. Managing and Mining Graph Data 2010: 547-580
2000 – 2009
- 2009
- [j4]Duygu Ucar
Predicting functionality of protein-DNA interactions by integrating diverse evidence. Bioinform. 25(12) (2009) - [j3]Sitaram Asur, Srinivasan Parthasarathy
An event-based framework for characterizing the evolutionary behavior of interaction graphs. ACM Trans. Knowl. Discov. Data 3(4): 16:1-16:36 (2009) - [c5]Duygu Ucar
Mutual Information Based Extrinsic Similarity for Microarray Analysis. BICoB 2009: 424-436 - 2007
- [j2]Hui Yang, Srinivasan Parthasarathy
A spatio-temporal mining approach towards summarizing and analyzing protein folding trajectories. Algorithms Mol. Biol. 2 (2007) - [j1]Duygu Ucar, Isaac Neuhaus, Petra Ross-MacDonald, Charles Tilford, Srinivasan Parthasarathy
Construction of a reference gene association network from multiple profiling data: application to data analysis. Bioinform. 23(20): 2716-2724 (2007) - [c4]Sitaram Asur, Duygu Ucar
An ensemble framework for clustering protein-protein interaction networks. ISMB/ECCB (Supplement of Bioinformatics) 2007: 29-40 - [c3]Sitaram Asur, Srinivasan Parthasarathy
An event-based framework for characterizing the evolutionary behavior of interaction graphs. KDD 2007: 913-921 - 2006
- [c2]Duygu Ucar
Improving Functional Modularity in Protein-Protein Interactions Graphs Using Hub-Induced Subgraphs. PKDD 2006: 371-382 - 2005
- [c1]Duygu Ucar, Srinivasan Parthasarathy
Effective Pre-Processing Strategies for Functional Clustering of a Protein-Protein Interactions Network. BIBE 2005: 129-136
Coauthor Index
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