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Joshua W. K. Ho
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2020 – today
- 2024
- [j24]Qiuchen Meng
, Lei Wei
scDecouple: decoupling cellular response from infected proportion bias in scCRISPR-seq. Briefings Bioinform. 25(2) (2024) - [j23]Shichao Ma
An edge-device-compatible algorithm for valvular heart diseases screening using phonocardiogram signals with a lightweight convolutional neural network and self-supervised learning. Comput. Methods Programs Biomed. 243: 107906 (2024) - 2023
- [c8]Weizhong Zheng, John H. C. Fong
Translation Rate Prediction and Regulatory Motif Discovery with Multi-task Learning. RECOMB 2023: 139-154 - 2022
- [j22]Ken Hung-On Yu, Xiunan Fang, Haobin Yao, Bond Ng, Tak Kwan Leung, Ling-Ling Wang
Evaluation of Experimental Protocols for Shotgun Whole-Genome Metagenomic Discovery of Antibiotic Resistance Genes. IEEE ACM Trans. Comput. Biol. Bioinform. 19(3): 1313-1321 (2022) - 2021
- [j21]Xiunan Fang, Joshua W. K. Ho
FlowGrid enables fast clustering of very large single-cell RNA-seq data. Bioinform. 38(1): 282-283 (2021) - 2020
- [j20]Shobana V. Stassen, Dickson M. D. Siu
PARC: ultrafast and accurate clustering of phenotypic data of millions of single cells. Bioinform. 36(9): 2778-2786 (2020) - [j19]Eddie Ip, Clinton Hadinata, Joshua Wing Kei Ho
dv-trio: a family-based variant calling pipeline using DeepVariant. Bioinform. 36(11): 3549-3551 (2020) - [j18]Joshua W. K. Ho
Introduction to the Special Issue on GIW/ABACBS 2019. J. Bioinform. Comput. Biol. 18(1): 2002001:1-2002001:3 (2020)
2010 – 2019
- 2019
- [j17]Xiaoxin Ye, Joshua Wing Kei Ho
Ultrafast clustering of single-cell flow cytometry data using FlowGrid. BMC Syst. Biol. 13-S(2): 35:1-35:8 (2019) - [j16]Djordje Djordjevic, Joshua Y. S. Tang, Yun Xin Chen, Shu Lun Shannon Kwan, Raymond W. K. Ling, Gordon Qian
Discovery of perturbation gene targets via free text metadata mining in Gene Expression Omnibus. Comput. Biol. Chem. 80: 152-158 (2019) - [r1]Xiaoxin Ye, Joshua W. K. Ho
Expression Clustering. Encyclopedia of Bioinformatics and Computational Biology (2) 2019: 388-395 - 2018
- [j15]Md Humayun Kabir
C3: An R package for cross-species compendium-based cell-type identification. Comput. Biol. Chem. 77: 187-192 (2018) - [j14]Atul Kakrana
iSyTE 2.0: a database for expression-based gene discovery in the eye. Nucleic Acids Res. 46(Database-Issue): D875-D885 (2018) - 2017
- [j13]Andrian Yang, Michael Troup, Peijie Lin, Joshua Wing Kei Ho
Falco: a quick and flexible single-cell RNA-seq processing framework on the cloud. Bioinform. 33(5): 767-769 (2017) - [j12]Pengyi Yang
Integrative analysis identifies co-dependent gene expression regulation of BRG1 and CHD7 at distal regulatory sites in embryonic stem cells. Bioinform. 33(13): 1916-1920 (2017) - [c7]Joshua Y. S. Tang, Andrian Yang, Tsong Yueh Chen
Harnessing Multiple Source Test Cases in Metamorphic Testing: A Case Study in Bioinformatics. MET@ICSE 2017: 10-13 - 2016
- [j11]Djordje Djordjevic
XGSA: A statistical method for cross-species gene set analysis. Bioinform. 32(17): 620-628 (2016) - [c6]Michael Troup, Andrian Yang, Amir Hossein Kamali, Eleni Giannoulatou
A cloud-based framework for applying metamorphic testing to a bioinformatics pipeline. MET@ICSE 2016: 33-36 - 2015
- [j10]Kyung-Ah Sohn
hiHMM: Bayesian non-parametric joint inference of chromatin state maps. Bioinform. 31(13): 2066-2074 (2015) - 2014
- [j9]Eleni Giannoulatou
Verification and validation of bioinformatics software without a gold standard: a case study of BWA and Bowtie. BMC Bioinform. 15(S-16): S15 (2014) - [j8]Joshua Wing Kei Ho
Comparative analysis of metazoan chromatin organization Open. Nat. 512(7515): 449-452 (2014) - 2011
- [j7]Pengyi Yang
Gene-gene interaction filtering with ensemble of filters. BMC Bioinform. 12(S-1): S10 (2011) - [j6]Md. Shaik Sadi, Fei-Ching Kuo, Joshua Wing Kei Ho
Verification of phylogenetic Inference Programs Using Metamorphic Testing. J. Bioinform. Comput. Biol. 9(6): 729-747 (2011) - [j5]Xiaoyuan Xie, Joshua Wing Kei Ho
Testing and validating machine learning classifiers by metamorphic testing. J. Syst. Softw. 84(4): 544-558 (2011) - 2010
- [j4]Pengyi Yang
A genetic ensemble approach for gene-gene interaction identification. BMC Bioinform. 11: 524 (2010)
2000 – 2009
- 2009
- [j3]Tsong Yueh Chen
An innovative approach for testing bioinformatics programs using metamorphic testing. BMC Bioinform. 10 (2009) - [j2]Md. Rafiul Hassan, M. Maruf Hossain, James Bailey, Geoff MacIntyre
A voting approach to identify a small number of highly predictive genes using multiple classifiers. BMC Bioinform. 10(S-1) (2009) - [c5]Xiaoyuan Xie, Joshua Wing Kei Ho
Application of Metamorphic Testing to Supervised Classifiers. QSIC 2009: 135-144 - 2008
- [c4]Joshua Wing Kei Ho
Differential variability analysis of gene expression and its application to human diseases. ISMB 2008: 390-398 - 2006
- [j1]Joshua Wing Kei Ho
SeqVis: Visualization of compositional heterogeneity in large alignments of nucleotides. Bioinform. 22(17): 2162-2163 (2006) - [c3]Joshua Wing Kei Ho
PathBank: Web-Based Querying and Visualziation of an Integrated Biological Pathway Database. CGIV 2006: 84-89 - 2005
- [c2]Adel Ahmed, Tim Dwyer
GEOMI: GEOmetry for Maximum Insight. GD 2005: 468-479 - [c1]Joshua Wing Kei Ho
Drawing Clustered Graphs in Three Dimensions. GD 2005: 492-502
Coauthor Index
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