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2020 – today

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2024
[j15]
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  - journals/bib/KonstantinovskyPPY24
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Thomas Konstantinovsky, Ayelet Peres, Pazit Polak, Gur Yaari:
An unbiased comparison of immunoglobulin sequence aligners. Briefings Bioinform. 25(6) (2024)
[j14]
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Gisela Gabernet, Susanna Marquez, Robert Bjornson, Alexander Peltzer, Hailong Meng, Edel Aron, Noah Y. Lee, Cole G. Jensen, David Ladd, Mark Polster, Friederike Hanssen, Simon Heumos, Gur Yaari, Markus C. Kowarik, Sven Nahnsen, Steven H. Kleinstein:
nf-core/airrflow: An adaptive immune receptor repertoire analysis workflow employing the Immcantation framework. PLoS Comput. Biol. 20(7): 1012265 (2024)
2021
[j13]
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  - journals/bdcc/PirvandyFY21
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Oz Pirvandy, Moti Fridman, Gur Yaari:
Gambling Strategies and Prize-Pricing Recommendation in Sports Multi-Bets. Big Data Cogn. Comput. 5(4): 70 (2021)
[j12]
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  - journals/natmi/PavlovicSMKKVWB21
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Milena Pavlovic, Lonneke Scheffer, Keshav Motwani, Chakravarthi Kanduri, Radmila Kompova, Nikolay Vazov, Knut Waagan, Fabian L. M. Bernal, Alexandre Almeida Costa, Brian Corrie, Rahmad Akbar, Ghadi S. Al Hajj, Gabriel Balaban, Todd M. Brusko, Maria Chernigovskaya, Scott Christley, Lindsay G. Cowell, Robert Frank, Ivar Grytten, Sveinung Gundersen, Ingrid Hobæk Haff, Eivind Hovig, Ping-Han Hsieh, Günter Klambauer, Marieke L. Kuijjer, Christin Lund-Andersen, Antonio Martini, Thomas Minotto, Johan Pensar, Knut D. Rand, Enrico Riccardi, Philippe A. Robert, Artur Rocha, Andrei Slabodkin, Igor Snapkov, Ludvig Magne Sollid, Dmytro Titov, Cédric R. Weber, Michael Widrich, Gur Yaari, Victor Greiff, Geir Kjetil Sandve:
The immuneML ecosystem for machine learning analysis of adaptive immune receptor repertoires. Nat. Mach. Intell. 3(11): 936-944 (2021)
[j11]
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Miri Gordin, Hagit Philip, Alona Zilberberg, Moriah Gidoni, Raanan Margalit, Christopher Clouser, Kristofor Adams, Francois Vigneault, Irun R. Cohen, Gur Yaari, Sol Efroni:
Breast cancer is marked by specific, Public T-cell receptor CDR3 regions shared by mice and humans. PLoS Comput. Biol. 17(1) (2021)
2020
[j10]
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  - journals/nar/OmerSPPSWBCLY20
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Aviv Omer, Or Shemesh, Ayelet Peres, Pazit Polak, Adrian J. Shepherd, Corey T. Watson, Scott D. Boyd, Andrew M. Collins, William D. Lees, Gur Yaari:
VDJbase: an adaptive immune receptor genotype and haplotype database. Nucleic Acids Res. 48(Database-Issue): D1051-D1056 (2020)
[j9]
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  - journals/nar/LeesBCOSMYWCS20
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William D. Lees, Christian E. Busse, Martin Corcoran, Mats Ohlin, Cathrine Scheepers, Frederick A. Matsen IV, Gur Yaari, Corey T. Watson, Andrew M. Collins, Adrian J. Shepherd:
OGRDB: a reference database of inferred immune receptor genes. Nucleic Acids Res. 48(Database-Issue): D964-D970 (2020)
[j8]
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  - journals/ni/OferSY20
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Netanel Ofer, Orit Shefi, Gur Yaari:
Axonal Tree Morphology and Signal Propagation Dynamics Improve Interneuron Classification. Neuroinformatics 18(4): 581-590 (2020)

2010 – 2019

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2019
[j7]
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  - journals/bioinformatics/PeresGPY19
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Ayelet Peres, Moriah Gidoni, Pazit Polak, Gur Yaari:
RAbHIT: R Antibody Haplotype Inference Tool. Bioinform. 35(22): 4840-4842 (2019)
[j6]
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  - journals/ploscb/MengYBAK19
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Hailong Meng, Gur Yaari, Christopher R. Bolen, Stefan Avey, Steven H. Kleinstein:
Gene set meta-analysis with Quantitative Set Analysis for Gene Expression (QuSAGE). PLoS Comput. Biol. 15(4) (2019)
[r2]
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Pazit Polak, Ramit Mehr, Gur Yaari:
Immunoglobulin Clonotype and Ontogeny Inference. Encyclopedia of Bioinformatics and Computational Biology (2) 2019: 972-983
2015
[j5]
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  - journals/bioinformatics/GuptaHUGYK15
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Namita T. Gupta, Jason A. Vander Heiden, Mohamed Uduman, Daniel Gadala-Maria, Gur Yaari, Steven H. Kleinstein:
Change-O: a toolkit for analyzing large-scale B cell immunoglobulin repertoire sequencing data. Bioinform. 31(20): 3356-3358 (2015)
2014
[j4]
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  - journals/bioinformatics/HeidenYUSOHVK14
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Jason A. Vander Heiden, Gur Yaari, Mohamed Uduman, Joel N. H. Stern, Kevin C. O'Connor, David A. Hafler, Francois Vigneault, Steven H. Kleinstein:
pRESTO: a toolkit for processing high-throughput sequencing raw reads of lymphocyte receptor repertoires. Bioinform. 30(13): 1930-1932 (2014)
2011
[j3]
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  - journals/nar/UdumanYHSSK11
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Mohamed Uduman, Gur Yaari, Uri Hershberg, Jacob A. Stern, Mark J. Shlomchik, Steven H. Kleinstein:
Detecting selection in immunoglobulin sequences. Nucleic Acids Res. 39(Web-Server-Issue): 499-504 (2011)
2010
[j2]
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  - journals/ploscb/ZionYS10
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Yossi Ben Zion, Gur Yaari, Nadav M. Shnerb:
Optimizing Metapopulation Sustainability through a Checkerboard Strategy. PLoS Comput. Biol. 6(1) (2010)

2000 – 2009

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2009
[j1]
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Yaniv Dover, Sonia Moulet, Sorin Solomon, Gur Yaari:
Do all economies grow equally fast? Risk Decis. Anal. 1(3): 171-185 (2009)
[r1]
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  - reference/complexity/YaariSS09
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Gur Yaari, Dietrich Stauffer, Sorin Solomon:
Intermittency and Localization. Encyclopedia of Complexity and Systems Science 2009: 4920-4930

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