default search action
Philipp Bucher
Person information
Refine list
refinements active!
zoomed in on ?? of ?? records
view refined list in
export refined list as
showing all ?? records
2020 – today
- 2021
- [j51]René Dreos
, Anna Sloutskin
Computational identification and experimental characterization of preferred downstream positions in human core promoters. PLoS Comput. Biol. 17(8) (2021) - 2020
- [j50]Patrick Meylan
EPD in 2020: enhanced data visualization and extension to ncRNA promoters. Nucleic Acids Res. 48(Database-Issue): D65-D69 (2020)
2010 – 2019
- 2019
- [j49]Romain Groux
SPar-K: a method to partition NGS signal data. Bioinform. 35(21): 4440-4441 (2019) - 2018
- [j48]Giovanna Ambrosini
PWMScan: a fast tool for scanning entire genomes with a position-specific weight matrix. Bioinform. 34(14): 2483-2484 (2018) - [j47]René Dreos, Giovanna Ambrosini
MGA repository: a curated data resource for ChIP-seq and other genome annotated data. Nucleic Acids Res. 46(Database-Issue): D175-D180 (2018) - 2017
- [j46]Sunil Kumar, Giovanna Ambrosini
SNP2TFBS - a database of regulatory SNPs affecting predicted transcription factor binding site affinity. Nucleic Acids Res. 45(Database-Issue): D139-D144 (2017) - [j45]René Dreos
The eukaryotic promoter database in its 30th year: focus on non-vertebrate organisms. Nucleic Acids Res. 45(Database-Issue): D51-D55 (2017) - 2016
- [j44]Sunil Kumar, Philipp Bucher:
Predicting transcription factor site occupancy using DNA sequence intrinsic and cell-type specific chromatin features. BMC Bioinform. 17(S-1): 4 (2016) - [j43]Nishanth Ulhas Nair
A maximum-likelihood approach for building cell-type trees by lifting. BMC Genom. 17(S-1): 14 (2016) - [j42]René Dreos
Influence of Rotational Nucleosome Positioning on Transcription Start Site Selection in Animal Promoters. PLoS Comput. Biol. 12(10) (2016) - 2015
- [j41]René Dreos
The Eukaryotic Promoter Database: expansion of EPDnew and new promoter analysis tools. Nucleic Acids Res. 43(Database-Issue): 92-96 (2015) - 2014
- [j40]Nishanth Ulhas Nair
Probabilistic partitioning methods to find significant patterns in ChIP-Seq data. Bioinform. 30(17): 2406-2413 (2014) - [j39]Nishanth Ulhas Nair
Study of cell differentiation by phylogenetic analysis using histone modification data. BMC Bioinform. 15: 269 (2014) - [j38]Heinz Stockinger
Fifteen years SIB Swiss Institute of Bioinformatics: life science databases, tools and support. Nucleic Acids Res. 42(Webserver-Issue): 436-441 (2014) - [c8]Giovanna Ambrosini, René Dreos, Philipp Bucher:
Principles of ChIP-seq Data Analysis Illustrated with Examples. IWBBIO 2014: 682-694 - [c7]René Dreos, Giovanna Ambrosini, Philipp Bucher:
Transcription factor binding and nucleosome positioning are alternative pathways for transcription start site selection in eukaryotic promoters. IWBBIO 2014: 695-706 - 2013
- [j37]Slavica Dimitrieva, Philipp Bucher:
UCNEbase - a database of ultraconserved non-coding elements and genomic regulatory blocks. Nucleic Acids Res. 41(Database-Issue): 101-109 (2013) - [j36]René Dreos
EPD and EPDnew, high-quality promoter resources in the next-generation sequencing era. Nucleic Acids Res. 41(Database-Issue): 157-164 (2013) - [c6]Nishanth Ulhas Nair
Phylogenetic Analysis of Cell Types Using Histone Modifications. WABI 2013: 326-337 - 2012
- [j35]Slavica Dimitrieva, Philipp Bucher:
Genomic context analysis reveals dense interaction network between vertebrate ultraconserved non-coding elements. Bioinform. 28(18): 395-401 (2012) - [j34]Slavica Dimitrieva, Philipp Bucher:
Practicality and Time Complexity of a Sparsified RNA Folding Algorithm. J. Bioinform. Comput. Biol. 10(2) (2012) - 2011
- [j33]Thomas J. Cradick
ZFN-Site searches genomes for zinc finger nuclease target sites and off-target sites. BMC Bioinform. 12: 152 (2011)
2000 – 2009
- 2009
- [j32]Viviane Praz, Philipp Bucher:
CleanEx: new data extraction and merging tools based on MeSH term annotation. Nucleic Acids Res. 37(Database-Issue): 880-884 (2009) - 2007
- [j31]Davide Rambaldi, Barbara Felice, Viviane Praz, Philipp Bucher, Davide Cittaro
Splicy: a web-based tool for the prediction of possible alternative splicing events from Affymetrix probeset data. BMC Bioinform. 8(S-1) (2007) - [j30]Christoph D. Schmid, Thierry Sengstag
MADAP, a flexible clustering tool for the interpretation of one-dimensional genome annotation data. Nucleic Acids Res. 35(Web-Server-Issue): 201-205 (2007) - 2006
- [j29]Christoph D. Schmid, Rouaïda Périer, Viviane Praz, Philipp Bucher:
EPD in its twentieth year: towards complete promoter coverage of selected model organisms. Nucleic Acids Res. 34(Database-Issue): 82-85 (2006) - [j28]Vidhya Jagannathan, Emmanuelle Roulet, Mauro Delorenzi, Philipp Bucher:
HTPSELEX - a database of high-throughput SELEX libraries for transcription factor binding sites. Nucleic Acids Res. 34(Database-Issue): 90-94 (2006) - [e1]Philipp Bucher, Bernard M. E. Moret:
Algorithms in Bioinformatics, 6th International Workshop, WABI 2006, Zurich, Switzerland, September 11-13, 2006, Proceedings. Lecture Notes in Computer Science 4175, Springer 2006, ISBN 3-540-39583-0 [contents] - 2005
- [j27]Florence Armand, Philipp Bucher, C. Victor Jongeneel
Rapid and selective surveillance of Arabidopsis thaliana genome annotations with Centrifuge. Bioinform. 21(12): 2906-2908 (2005) - [j26]Peter Sperisen, Christoph D. Schmid, Philipp Bucher, Olav Zilian:
Stealth Proteins: In Silico Identification of a Novel Protein Family Rendering Bacterial Pathogens Invisible to Host Immune Defense. PLoS Comput. Biol. 1(6) (2005) - 2004
- [j25]Christoph D. Schmid, Viviane Praz, Mauro Delorenzi, Rouaïda Périer, Philipp Bucher:
The Eukaryotic Promoter Database EPD: the impact of in silico primer extension. Nucleic Acids Res. 32(Database-Issue): 82-85 (2004) - [j24]Nicolas Hulo, Christian J. A. Sigrist
Recent improvements to the PROSITE database. Nucleic Acids Res. 32(Database-Issue): 134-137 (2004) - [j23]Peter Sperisen, Christian Iseli
trome, trEST and trGEN: databases of predicted protein sequences. Nucleic Acids Res. 32(Database-Issue): 509-511 (2004) - [j22]Viviane Praz, Vidhya Jagannathan, Philipp Bucher:
CleanEx: a database of heterogeneous gene expression data based on a consistent gene nomenclature. Nucleic Acids Res. 32(Database-Issue): 542-547 (2004) - 2003
- [j21]Nicola J. Mulder, Rolf Apweiler
The InterPro Database, 2003 brings increased coverage and new features. Nucleic Acids Res. 31(1): 315-318 (2003) - [j20]Giovanna Ambrosini
Signal search analysis server. Nucleic Acids Res. 31(13): 3618-3620 (2003) - [c5]Claudio Lottaz, Christian Iseli, C. Victor Jongeneel, Philipp Bucher:
Modeling sequencing errors by combining Hidden Markov models. ECCB 2003: 103-112 - [c4]Orla O'Sullivan, Mark Zehnder, Desmond G. Higgins, Philipp Bucher, Aurélien Grosdidier, Cédric Notredame:
APDB: a novel measure for benchmarking sequence alignment methods without reference alignments. ISMB (Supplement of Bioinformatics) 2003: 215-221 - 2002
- [j19]Nicola J. Mulder
InterPro: An Integrated Documentation Resource for Protein Families, Domains and Functional Sites. Briefings Bioinform. 3(3): 225-235 (2002) - [j18]Christian J. A. Sigrist
PROSITE: A Documented Database Using Patterns and Profiles as Motif Descriptors. Briefings Bioinform. 3(3): 265-274 (2002) - [j17]Laurent Falquet, Marco Pagni
The PROSITE database, its status in 2002. Nucleic Acids Res. 30(1): 235-238 (2002) - [j16]Viviane Praz, Rouaïda Périer, Claude Bonnard, Philipp Bucher:
The Eukaryotic Promoter Database, EPD: new entry types and links to gene expression data. Nucleic Acids Res. 30(1): 322-324 (2002) - 2001
- [j15]Thomas Junier, Marco Pagni
mmsearch: a motif arrangement language and search program. Bioinform. 17(12): 1234-1235 (2001) - [j14]Rolf Apweiler
The InterPro database, an integrated documentation resource for protein families, domains and functional sites. Nucleic Acids Res. 29(1): 37-40 (2001) - [j13]Marco Pagni
trEST, trGEN and Hits: access to databases of predicted protein sequences. Nucleic Acids Res. 29(1): 148-151 (2001) - 2000
- [j12]Rolf Apweiler
InterPro-an integrated documentation resource for protein families, domains and functional sites. Bioinform. 16(12): 1145-1150 (2000) - [j11]Rouaïda Cavin Périer, Viviane Praz, Thomas Junier, Claude Bonnard, Philipp Bucher:
The Eukaryotic Promoter Database (EPD). Nucleic Acids Res. 28(1): 302-303 (2000)
1990 – 1999
- 1999
- [j10]Kay Hofmann
The PROSITE database, its status in 1999. Nucleic Acids Res. 27(1): 215-219 (1999) - [j9]Rouaïda Périer, Thomas Junier, Claude Bonnard, Philipp Bucher:
The Eukaryotic Promoter Database (EPD): recent developments. Nucleic Acids Res. 27(1): 307-309 (1999) - [c3]Christian Iseli, C. Victor Jongeneel, Philipp Bucher:
ESTScan: A Program for Detecting, Evaluating, and Reconstructing Potential Coding Regions in EST Sequences. ISMB 1999: 138-148 - 1998
- [j8]Thomas Junier, Philipp Bucher:
SEView: a Java applet for browsing molecular sequence data. Silico Biol. 1(1): 13-20 (1998) - [j7]Emmanuelle Roulet, Igor Fisch, Thomas Junier, Philipp Bucher, Nicolas Mermod:
Evaluation of computer tools for the prediction of transcription factor binding sites on genomic DNA. Silico Biol. 1(1): 21-28 (1998) - [j6]Rouaïda Périer, Thomas Junier, Philipp Bucher:
The Eukaryotic Promoter Database EPD. Nucleic Acids Res. 26(1): 353-357 (1998) - 1997
- [j5]Amos Bairoch
The PROSITE database, its status in 1997. Nucleic Acids Res. 25(1): 217-221 (1997) - 1996
- [j4]Philipp Bucher, James W. Fickett, Artemis G. Hatzigeorgiou:
Computational analysis of transcriptional regulatory elements: a field in flux. Comput. Appl. Biosci. 12(5): 361-362 (1996) - [j3]Philipp Bucher, Kevin Karplus, Nicolas Moeri, Kay Hofmann
A Flexible Motif Search Technique Based on Generalized Profiles. Comput. Chem. 20(1): 3-23 (1996) - [j2]Amos Bairoch
The PROSITE database, its status in 1995. Nucleic Acids Res. 24(1): 189-196 (1996) - [c2]Philipp Bucher, Kay Hofmann:
A Sequence Similarity Search Algorithm Based on a Probabilistic Interpretation of an Alignment Scoring System. ISMB 1996: 44-51 - 1994
- [c1]Philipp Bucher, Amos Bairoch:
A Generalized Profile Syntax for Biomolecular Sequence Motifs and its Function in Automatic Sequence Interpretation. ISMB 1994: 53-61
1980 – 1989
- 1984
- [j1]Philipp Bucher, B. Bryan:
Signal search analysis: a new method to localize and characterize functionally important DNA sequences. Nucleic Acids Res. 12(1): 287-305 (1984)
Coauthor Index
manage site settings
To protect your privacy, all features that rely on external API calls from your browser are turned off by default. You need to opt-in for them to become active. All settings here will be stored as cookies with your web browser. For more information see our F.A.Q.
Unpaywalled article links
Add open access links from to the list of external document links (if available).
Privacy notice: By enabling the option above, your browser will contact the API of unpaywall.org to load hyperlinks to open access articles. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Unpaywall privacy policy.
Archived links via Wayback Machine
For web page which are no longer available, try to retrieve content from the of the Internet Archive (if available).
Privacy notice: By enabling the option above, your browser will contact the API of archive.org to check for archived content of web pages that are no longer available. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Internet Archive privacy policy.
Reference lists
Add a list of references from ,
, and
to record detail pages.
load references from crossref.org and opencitations.net
Privacy notice: By enabling the option above, your browser will contact the APIs of crossref.org, opencitations.net, and semanticscholar.org to load article reference information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Crossref privacy policy and the OpenCitations privacy policy, as well as the AI2 Privacy Policy covering Semantic Scholar.
Citation data
Add a list of citing articles from and
to record detail pages.
load citations from opencitations.net
Privacy notice: By enabling the option above, your browser will contact the API of opencitations.net and semanticscholar.org to load citation information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the OpenCitations privacy policy as well as the AI2 Privacy Policy covering Semantic Scholar.
OpenAlex data
Load additional information about publications from .
Privacy notice: By enabling the option above, your browser will contact the API of openalex.org to load additional information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the information given by OpenAlex.
last updated on 2024-04-25 05:59 CEST by the dblp team
all metadata released as open data under CC0 1.0 license
see also: Terms of Use | Privacy Policy | Imprint
dblp was originally created in 1993 at:
since 2018, dblp has been operated and maintained by:
the dblp computer science bibliography is funded and supported by: