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Madalena Chaves
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2020 – today
- 2025
- [j18]Odile Burckard, Michèle Teboul, Franck Delaunay, Madalena Chaves:
Benchmark for quantitative characterization of circadian clock cycles. Biosyst. 247: 105363 (2025) - 2023
- [j17]Nicolas Augier
, Madalena Chaves
Qualitative Control Strategies for Synchronization of Bistable Gene Regulatory Networks. IEEE Trans. Autom. Control. 68(2): 673-688 (2023) - 2021
- [j16]Tomas Veloz
Special issue "International Symposium on Molecular Logic and Computational Synthetic Biology: MLCSB18". Soft Comput. 25(9): 6729-6730 (2021) - 2020
- [j15]Sofia Almeida
Cell cycle period control through modulation of clock inputs. J. Bioinform. Comput. Biol. 18(3): 2040006:1-2040006:16 (2020) - [j14]Madalena Chaves
Boolean dynamics revisited through feedback interconnections. Nat. Comput. 19(1): 29-49 (2020) - [c17]Ousmane Diop, Madalena Chaves, Laurent Tournier:
Qualitative Analysis of Mammalian Circadian Oscillations: Cycle Dynamics and Robustness. CMSB 2020: 176-192 - [c16]Marielle Péré, Madalena Chaves, Jérémie Roux
Core Models of Receptor Reactions to Evaluate Basic Pathway Designs Enabling Heterogeneous Commitments to Apoptosis. CMSB 2020: 298-320 - [c15]Luis C. Gomes-Pereira, Madalena Chaves, Jérémie Roux
A model of apoptosis receptor reactions to study cell fate decision. MED 2020: 887-892
2010 – 2019
- 2019
- [j13]Madalena Chaves, Diego A. Oyarzún
Dynamics of complex feedback architectures in metabolic pathways. Autom. 99: 323-332 (2019) - [c14]Madalena Chaves, Luca Scardovi, Eleni Firippi:
Coupling and synchronization of piecewise linear genetic regulatory systems. CDC 2019: 2826-2831 - [c13]Daniel Figueiredo
rPrism - A Software for Reactive Weighted State Transition Models. HSB 2019: 165-174 - [e1]Madalena Chaves, Manuel A. Martins:
Molecular Logic and Computational Synthetic Biology - First International Symposium, MLCSB 2018, Santiago, Chile, December 17-18, 2018, Revised Selected Papers. Lecture Notes in Computer Science 11415, Springer 2019, ISBN 978-3-030-19431-4 [contents] - 2018
- [j12]Camille Poignard, Madalena Chaves
A Stability Result for Periodic Solutions of Nonmonotonic Smooth Negative Feedback Systems. SIAM J. Appl. Dyn. Syst. 17(2): 1091-1116 (2018) - 2016
- [j11]Camille Poignard, Madalena Chaves
Periodic Oscillations for Nonmonotonic Smooth Negative Feedback Circuits. SIAM J. Appl. Dyn. Syst. 15(1): 257-286 (2016) - 2015
- [j10]Alfonso Carta, Madalena Chaves
Continuous-switch piecewise quadratic models of biological networks: Application to bacterial growth. Autom. 61: 164-172 (2015) - [j9]Madalena Chaves
Attractor computation using interconnected Boolean networks: Testing growth rate models in E. Coli. Theor. Comput. Sci. 599: 47-63 (2015) - 2013
- [b1]Madalena Chaves:
Predictive analysis of dynamical systems: combining discrete and continuous formalisms. University of Nice Sophia Antipolis, France, 2013 - [j8]Laurent Tournier, Madalena Chaves
Interconnection of asynchronous Boolean networks, asymptotic and transient dynamics. Autom. 49(4): 884-893 (2013) - [c12]Christian Breindl, Madalena Chaves
A linear reformulation of Boolean optimization problems and structure identification of gene regulation networks. CDC 2013: 733-738 - [c11]Alfonso Carta, Madalena Chaves
A Class of Switched Piecewise Quadratic Systems for Coupling Gene Expression with Growth Rate in Bacteria. NOLCOS 2013: 271-276 - 2012
- [c10]Alfonso Carta, Madalena Chaves
A Simple Model to Control Growth Rate of Synthetic E. coli during the Exponential Phase: Model Analysis and Parameter Estimation. CMSB 2012: 107-126 - 2011
- [j7]Madalena Chaves
Exact control of genetic networks in a qualitative framework: The bistable switch example. Autom. 47(6): 1105-1112 (2011) - [c9]Madalena Chaves
Predicting the asymptotic dynamics of large biological networks by interconnections of Boolean modules. CDC/ECC 2011: 3026-3031 - [c8]Xiao-Dong Li, Jean-Luc Gouzé
An observer for a piecewise affine genetic network model with Boolean observations. CDC/ECC 2011: 4389-4394
2000 – 2009
- 2009
- [j6]Thomas Eissing
Live and let die - A systems biology view on cell death. Comput. Chem. Eng. 33(3): 583-589 (2009) - [j5]Adel Dayarian, Madalena Chaves
Shape, Size, and Robustness: Feasible Regions in the Parameter Space of Biochemical Networks. PLoS Comput. Biol. 5(1) (2009) - [c7]Madalena Chaves
Methods for qualitative analysis of genetic networks. ECC 2009: 671-676 - [c6]Laurent Tournier, Madalena Chaves
Operational interactions in genetic networks: Application to an apoptosis signalling pathway. ECC 2009: 1889-1894 - 2008
- [j4]Madalena Chaves
Bistable Biological Systems: A Characterization Through Local Compact Input-to-State Stability. IEEE Trans. Autom. Control. 53: 87-100 (2008) - 2006
- [j3]Eduardo D. Sontag, Madalena Chaves
Exact computation of amplification for a class of nonlinear systems arising from cellular signaling pathways. Autom. 42(11): 1987-1992 (2006) - [c5]Madalena Chaves
Structure and timescale analysis in genetic regulatory networks. CDC 2006: 2358-2363 - [c4]Madalena Chaves
Stability of Rate-Controlled Zero-Deficiency Networks. CDC 2006: 5766-5771 - 2005
- [j2]Madalena Chaves
Input-to-State Stability of Rate-Controlled Biochemical Networks. SIAM J. Control. Optim. 44(2): 704-727 (2005) - 2004
- [c3]Madalena Chaves, Eduardo D. Sontag, Robert J. Dinerstein:
Gains and optimal design in signaling pathways. CDC 2004: 596-601 - 2003
- [c2]Sonja Glavaski, Madalena Chaves, Robert Day, Parthasarathi Nag, Anca Williams, Wei Zhang:
Vehicle networks: achieving regular formation. ACC 2003: 4095-4100 - 2002
- [j1]Madalena Chaves, Eduardo D. Sontag:
State-estimators for Chemical Reaction Networks of Feinberg-Horn-Jackson Zero Deficiency Type. Eur. J. Control 8(4): 343-359 (2002) - 2001
- [c1]Madalena Chaves, Eduardo D. Sontag:
Observers for chemical reaction networks. ECC 2001: 3715-3720
Coauthor Index
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