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Sverker Holmgren
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2010 – 2019
- 2017
- [j20]Behrang Mahjani
, Salman Zubair Toor, Carl Nettelblad
A Flexible Computational Framework Using R and Map-Reduce for Permutation Tests of Massive Genetic Analysis of Complex Traits. IEEE ACM Trans. Comput. Biol. Bioinform. 14(2): 381-392 (2017) - [c23]Maya G. Neytcheva, Sverker Holmgren, Jonathan R. Bull
Multidimensional Performance and Scalability Analysis for Diverse Applications Based on System Monitoring Data. PPAM (1) 2017: 417-431 - 2014
- [j19]Marcus Holm, Stefan Engblom
Dynamic Autotuning of Adaptive Fast Multipole Methods on Hybrid Multicore CPU and GPU Systems. SIAM J. Sci. Comput. 36(4) (2014) - [c22]Malin Källén, Sverker Holmgren, Ebba Þóra Hvannberg
Impact of Code Refactoring Using Object-Oriented Methodology on a Scientific Computing Application. SCAM 2014: 125-134 - 2013
- [j18]Erwin Laure, Sverker Holmgren:
Preface. Future Gener. Comput. Syst. 29(8): 2115-2116 (2013) - [j17]Carl Nettelblad
Fast and Accurate Detection of Multiple Quantitative Trait Loci. J. Comput. Biol. 20(9): 687-702 (2013) - [c21]Andrej Andrejev
Scientific Analysis by Queries in Extended SPARQL over a Scalable e-Science Data Store. e-Science 2013: 98-106 - [i1]Marcus Holm, Stefan Engblom, Anders Goude, Sverker Holmgren:
Dynamic autotuning of adaptive fast multipole methods on hybrid multicore CPU \& GPU systems. CoRR abs/1311.1006 (2013) - 2012
- [c20]Per-Olov Östberg, Andreas Hellander, Brian Drawert, Erik Elmroth, Sverker Holmgren, Linda R. Petzold:
Abstractions for Scaling eScience Applications to Distributed Computing Environments - A StratUm Integration Case Study in Molecular Systems Biology. BIOINFORMATICS 2012: 290-294 - [c19]Per-Olov Östberg, Andreas Hellander
Reducing Complexity in Management of eScience Computations. CCGRID 2012: 845-852 - [c18]Salman Zubair Toor, Rainer Töebbicke, Maitane Zotes Resines, Sverker Holmgren:
Investigating an Open Source Cloud Storage Infrastructure for CERN-specific Data Analysis. NAS 2012: 84-88 - 2011
- [j16]Katharina Kormann
Global error control of the time-propagation for the Schrödinger equation with a time-dependent Hamiltonian. J. Comput. Sci. 2(2): 178-187 (2011) - [c17]Salman Zubair Toor, Manivasakan Sabesan, Sverker Holmgren, Tore Risch:
A Scalable Architecture for e-Science Data Management. eScience 2011: 210-217 - [c16]Karl Ljungkvist, Martin Tillenius, David Black-Schaffer, Sverker Holmgren, Martin Karlsson, Elisabeth Larsson
Using Hardware Transactional Memory for High-Performance Computing. IPDPS Workshops 2011: 1660-1667 - 2010
- [j15]Kateryna Mishchenko, Lars Rönnegård
Assessing a multiple QTL search using the variance component model. Comput. Biol. Chem. 34(1): 34-41 (2010) - [j14]Katharina Kormann
A Fourier-Coefficient Based Solution of an Optimal Control Problem in Quantum Chemistry. J. Optim. Theory Appl. 147(3): 491-506 (2010) - [c15]Mahen Jayawardena, Carl Nettelblad, Salman Zubair Toor, Per-Olov Östberg, Erik Elmroth, Sverker Holmgren:
A Grid-Enabled Problem Solving Environment for QTL Analysis in R. BICoB 2010: 202-209 - [c14]Magnus Gustafsson, Katharina Kormann
Communication-Efficient Algorithms for Numerical Quantum Dynamics. PARA (2) 2010: 368-378 - [c13]Marcus Holm, Sverker Holmgren:
Efficiently Implementing Monte Carlo Electrostatics Simulations on Multicore Accelerators. PARA (2) 2010: 379-388
2000 – 2009
- 2009
- [j13]Dan Wallin, Henrik Löf, Erik Hagersten, Sverker Holmgren:
Reconsidering algorithms for iterative solvers in the multicore era. Int. J. Comput. Sci. Eng. 4(4): 270-282 (2009) - [c12]Carl Nettelblad
cnF2freq: Efficient Determination of Genotype and Haplotype Probabilities in Outbred Populations Using Markov Models. BICoB 2009: 307-319 - 2008
- [j12]Kateryna Mishchenko, Sverker Holmgren, Lars Rönnegård:
Newton-type methods for REML estimation in genetic analysis of quantitative traits. J. Comput. Methods Sci. Eng. 8(1-2): 53-67 (2008) - 2007
- [j11]Markus Nordén, Henrik Löf, Jarmo Rantakokko, Sverker Holmgren:
Dynamic Data Migration for Structured AMR Solvers. Int. J. Parallel Program. 35(5): 477-491 (2007) - [j10]Henrik Brandén, Sverker Holmgren, Per Sundqvist:
Discrete Fundamental Solution Preconditioning for Hyperbolic Systems of PDE. J. Sci. Comput. 30(1): 35-60 (2007) - [c11]Mahen Jayawardena, Sverker Holmgren:
Grid-Enabling an Efficient Algorithm for Demanding Global Optimization Problems in Genetic Analysis. eScience 2007: 205-212 - 2006
- [j9]Markus Nordén, Sverker Holmgren, Michael Thuné:
OpenMP versus MPI for PDE solvers based on regular sparse numerical operators. Future Gener. Comput. Syst. 22(1-2): 194-203 (2006) - [c10]Dan Wallin, Henrik Löf, Erik Hagersten, Sverker Holmgren:
Multigrid and Gauss-Seidel smoothers revisited: parallelization on chip multiprocessors. ICS 2006: 145-155 - [c9]Markus Nordén, Henrik Löf, Jarmo Rantakokko, Sverker Holmgren:
Geographical Locality and Dynamic Data Migration for OpenMP Implementations of Adaptive PDE Solvers. IWOMP 2006: 382-393 - [c8]Ann-Charlotte Berglund Sonnhammer, Sverker Holmgren:
Bioinformatics and Computational Biology: Minisymposium Abstract. PARA 2006: 626 - [c7]Mahen Jayawardena, Kajsa Ljungberg, Sverker Holmgren:
Using Parallel Computing and Grid Systems for Genetic Mapping of Quantitative Traits. PARA 2006: 627-636 - 2005
- [c6]Henrik Löf, Sverker Holmgren:
affinity-on-next-touch: increasing the performance of an industrial PDE solver on a cc-NUMA system. ICS 2005: 387-392 - 2004
- [j8]Kajsa Ljungberg, Sverker Holmgren, Örjan Carlborg
Simultaneous search for multiple QTL using the global optimization algorithm DIRECT. Bioinform. 20(12): 1887-1895 (2004) - [c5]Henrik Löf, Markus Nordén, Sverker Holmgren:
Improving Geographical Locality of Data for Shared Memory Implementations of PDE Solvers. International Conference on Computational Science 2004: 9-16 - [c4]Henrik Johansson, Dan Wallin, Sverker Holmgren:
Analyzing Advanced PDE Solvers Through Simulation. PARA 2004: 893-900 - 2003
- [j7]Sverker Holmgren, Anders Ynnerman:
The Swedish National Graduate School in Scientific Computing (NGSSC). Future Gener. Comput. Syst. 19(8): 1275-1283 (2003) - [c3]Dan Wallin, Henrik Johansson, Sverker Holmgren:
Cache Memory Behavior of Advanced PDE Solvers. PARCO 2003: 475-482 - 2002
- [j6]Kajsa Ljungberg, Sverker Holmgren, Örjan Carlborg
Efficient Algorithms for Quantitative Trait Loci Mapping Problems. J. Comput. Biol. 9(6): 793-804 (2002) - [j5]Sverker Holmgren, Markus Nordén, Jarmo Rantakokko, Dan Wallin:
Performance of PDE solvers on a self-optimizing NUMA architecture. Parallel Algorithms Appl. 17(4): 285-299 (2002) - [c2]Markus Nordén, Sverker Holmgren, Michael Thuné:
OpenMP versus MPI for PDE Solvers Based on Regular Sparse Numerical Operators. International Conference on Computational Science (3) 2002: 681-690 - 2001
- [c1]Sverker Holmgren, Dan Wallin:
Performance of High-Accuracy PDE Solvers on a Self-Optimizing NUMA Architecture. Euro-Par 2001: 602-610
1990 – 1999
- 1999
- [j4]Henrik Brandén, Sverker Holmgren:
Convergence Acceleration for Hyperbolic Systems Using Semicirculant Approximations. J. Sci. Comput. 14(4): 357-393 (1999) - [j3]Sverker Holmgren, Henrik Brandén, Erik Sterner:
Convergence Acceleration for the Linearized Navier-Stokes Equations using Semicirculant Approximations. SIAM J. Sci. Comput. 21(4): 1524-1550 (1999) - 1996
- [j2]Sverker Holmgren, Kurt Otto:
Semicirculant Solvers and Boundary Corrections for First-Order Partial Differential Equations. SIAM J. Sci. Comput. 17(3): 613-630 (1996) - 1994
- [j1]Sverker Holmgren, Kurt Otto:
Semicirculant Preconditioners for First-Order Partial Differential Equations. SIAM J. Sci. Comput. 15(2): 385-407 (1994)
Coauthor Index
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