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Nathan D. Price 0001
Person information
- affiliation: Institute for Systems Biology, Seattle, WA, USA
- affiliation: University of Illinois, Department of Chemical and Biomolecular Engineering, Urbana, IL, USA
- affiliation (PhD 2005): University of California San Diego, Department of Bioengineering, San Diego, CA, USA
Other persons with the same name
- Nathan D. Price 0002 — Missouri University of Science and Technology, Department of Electrical and Computer Engineering, Rolla, MO, USA
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2010 – 2019
- 2019
- [j24]Fangzhou Shen, Renliang Sun, Jie Yao, Jian Li, Qian Liu, Nathan D. Price, Chenguang Liu, Zhuo Wang:
OptRAM: In-silico strain design via integrative regulatory-metabolic network modeling. PLoS Comput. Biol. 15(3) (2019) - 2018
- [j23]Brendan King, Terry Farrah, Matthew A. Richards, Michael B. Mundy, Evangelos Simeonidis, Nathan D. Price:
ProbAnnoWeb and ProbAnnoPy: probabilistic annotation and gap-filling of metabolic reconstructions. Bioinform. 34(9): 1594-1596 (2018) - [i2]Ravi K. Madduri, Kyle Chard, Michel D'Arcy, Segun Jung, Alexis A. Rodriguez, Dinanath Sulakhe, Eric Deutsch, Cory C. Funk, Benjamin D. Heavner, Matthew A. Richards, Paul Shannon, Gustavo Glusman, Nathan D. Price, Carl Kesselman, Ian T. Foster:
Reproducible big data science: A case study in continuous FAIRness. RO 2018 - 2016
- [j22]Joseph Xu Zhou, Areejit Samal, Aymeric Fouquier d'Hérouël, Nathan D. Price, Sui Huang:
Relative stability of network states in Boolean network models of gene regulation in development. Biosyst. 142-143: 15-24 (2016) - [c2]Kyle Chard, Mike D'Arcy, Benjamin D. Heavner, Ian T. Foster, Carl Kesselman, Ravi K. Madduri, Alexis A. Rodriguez, Stian Soiland-Reyes, Carole A. Goble, Kristi Clark, Eric W. Deutsch, Ivo D. Dinov, Nathan D. Price, Arthur W. Toga:
I'll take that to go: Big data bags and minimal identifiers for exchange of large, complex datasets. IEEE BigData 2016: 319-328 - 2015
- [j21]Arthur W. Toga, Ian T. Foster, Carl Kesselman, Ravi K. Madduri, Kyle Chard, Eric W. Deutsch, Nathan D. Price, Gustavo Glusman, Benjamin D. Heavner, Ivo D. Dinov, Joseph Ames, John D. Van Horn, Roger Kramer, Leroy E. Hood:
Big biomedical data as the key resource for discovery science. J. Am. Medical Informatics Assoc. 22(6): 1126-1131 (2015) - [j20]Benjamin D. Heavner, Nathan D. Price:
Comparative Analysis of Yeast Metabolic Network Models Highlights Progress, Opportunities for Metabolic Reconstruction. PLoS Comput. Biol. 11(11) (2015) - [j19]Shuyi Ma, Kyle J. Minch, Tige R. Rustad, Samuel Hobbs, Suk-Lin Zhou, David R. Sherman, Nathan D. Price:
Integrated Modeling of Gene Regulatory and Metabolic Networks in Mycobacterium tuberculosis. PLoS Comput. Biol. 11(11) (2015) - 2014
- [j18]Matthew N. Benedict, Michael B. Mundy, Christopher S. Henry, Nicholas Chia, Nathan D. Price:
Likelihood-Based Gene Annotations for Gap Filling and Quality Assessment in Genome-Scale Metabolic Models. PLoS Comput. Biol. 10(10) (2014) - 2013
- [j17]Benjamin D. Heavner, Kieran Smallbone, Nathan D. Price, Larry P. Walker:
Version 6 of the consensus yeast metabolic network refines biochemical coverage and improves model performance. Database J. Biol. Databases Curation 2013 (2013) - [j16]John C. Earls, James A. Eddy, Cory C. Funk, Youn-Hee Ko, Andrew T. Magis, Nathan D. Price:
AUREA: an open-source software system for accurate and user-friendly identification of relative expression molecular signatures. BMC Bioinform. 14: 78 (2013) - [j15]Jaeyun Sung, Pan-Jun Kim, Shuyi Ma, Cory C. Funk, Andrew T. Magis, Yuliang Wang, Leroy E. Hood, Donald Geman, Nathan D. Price:
Multi-study Integration of Brain Cancer Transcriptomes Reveals Organ-Level Molecular Signatures. PLoS Comput. Biol. 9(7) (2013) - [j14]Sriram Chandrasekaran, Nathan D. Price:
Metabolic Constraint-Based Refinement of Transcriptional Regulatory Networks. PLoS Comput. Biol. 9(12) (2013) - 2012
- [j13]Gürkan Bebek, Mehmet Koyutürk, Nathan D. Price, Mark R. Chance:
Network biology methods integrating biological data for translational science. Briefings Bioinform. 13(4): 446-459 (2012) - [j12]Andrew T. Magis, Nathan D. Price:
The top-scoring 'N' algorithm: a generalized relative expression classification method from small numbers of biomolecules. BMC Bioinform. 13: 227 (2012) - [j11]Yuliang Wang, James A. Eddy, Nathan D. Price:
Reconstruction of genome-scale metabolic models for 126 human tissues using mCADRE. BMC Syst. Biol. 6: 153 (2012) - 2011
- [j10]Andrew T. Magis, John C. Earls, Youn-Hee Ko, James A. Eddy, Nathan D. Price:
Graphics processing unit implementations of relative expression analysis algorithms enable dramatic computational speedup. Bioinform. 27(6): 872-873 (2011) - [j9]Caroline B. Milne, James A. Eddy, Ravali Raju, Soroush Ardekani, Pan-Jun Kim, Ryan S. Senger, Yong-Su Jin, Hans P. Blaschek, Nathan D. Price:
Metabolic network reconstruction and genome-scale model of butanol-producing strain Clostridium beijerinckii NCIMB 8052. BMC Syst. Biol. 5: 130 (2011) - [j8]Pan-Jun Kim, Nathan D. Price:
Genetic Co-Occurrence Network across Sequenced Microbes. PLoS Comput. Biol. 7(12) (2011) - [c1]Gürkan Bebek, Mehmet Koyutürk, Mark R. Chance, Nathan D. Price:
Session Introduction. Pacific Symposium on Biocomputing 2011: 1-3 - 2010
- [j7]James A. Eddy, Leroy E. Hood, Nathan D. Price, Donald Geman:
Identifying Tightly Regulated and Variably Expressed Networks by Differential Rank Conservation (DIRAC). PLoS Comput. Biol. 6(5) (2010) - [j6]Olgica Milenkovic, Gil Alterovitz, Gerard Battail, Todd P. Coleman, Joachim Hagenauer, Sean P. Meyn, Nathan D. Price, Marco Ramoni, Ilya Shmulevich, Wojciech Szpankowski:
Introduction to the special issue on information theory in molecular biology and neuroscience. IEEE Trans. Inf. Theory 56(2): 649-652 (2010) - [j5]David J. Galas, Matti Nykter, Gregory W. Carter, Nathan D. Price, Ilya Shmulevich:
Biological information as set-based complexity. IEEE Trans. Inf. Theory 56(2): 667-677 (2010)
2000 – 2009
- 2009
- [r1]James A. Eddy, Nathan D. Price:
Biological Data Integration and Model Building. Encyclopedia of Complexity and Systems Science 2009: 511-524 - 2008
- [i1]David J. Galas, Matti Nykter, Gregory W. Carter, Nathan D. Price, Ilya Shmulevich:
Set-based complexity and biological information. CoRR abs/0801.4024 (2008) - 2006
- [j4]Scott A. Becker, Nathan D. Price, Bernhard O. Palsson:
Metabolite coupling in genome-scale metabolic networks. BMC Bioinform. 7: 111 (2006) - [j3]Christian L. Barrett, Nathan D. Price, Bernhard O. Palsson:
Network-level analysis of metabolic regulation in the human red blood cell using random sampling and singular value decomposition. BMC Bioinform. 7: 132 (2006) - [j2]Timothy E. Allen, Nathan D. Price, Andrew R. Joyce, Bernhard Ø. Palsson:
Long-Range Periodic Patterns in Microbial Genomes Indicate Significant Multi-Scale Chromosomal Organization. PLoS Comput. Biol. 2(1) (2006) - [j1]Erwin P. Gianchandani, Jason A. Papin, Nathan D. Price, Andrew R. Joyce, Bernhard Ø. Palsson:
Matrix Formalism to Describe Functional States of Transcriptional Regulatory Systems. PLoS Comput. Biol. 2(8) (2006)
Coauthor Index
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