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Tom L. Blundell
Person information
- affiliation: University of Cambridge, Department of Biochemistry, UK
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2020 – today
- 2024
- [j51]Yuanqi Du, Arian R. Jamasb
, Jeff Guo
Machine learning-aided generative molecular design. Nat. Mac. Intell. 6(6): 589-604 (2024) - [c3]Arian Rokkum Jamasb, Alex Morehead, Chaitanya K. Joshi, Zuobai Zhang, Kieran Didi, Simon V. Mathis, Charles Harris, Jian Tang, Jianlin Cheng, Pietro Lio, Tom L. Blundell:
Evaluating Representation Learning on the Protein Structure Universe. ICLR 2024 - [i3]Arian R. Jamasb, Alex Morehead, Chaitanya K. Joshi, Zuobai Zhang, Kieran Didi, Simon V. Mathis, Charles Harris, Jian Tang, Jianlin Cheng, Pietro Lio, Tom L. Blundell:
Evaluating representation learning on the protein structure universe. CoRR abs/2406.13864 (2024) - 2022
- [j50]Martin Bartas
Unheeded SARS-CoV-2 proteins? A deep look into negative-sense RNA. Briefings Bioinform. 23(3) (2022) - [j49]Carlos H. M. Rodrigues, Douglas E. V. Pires
Structural landscapes of PPI interfaces. Briefings Bioinform. 23(4) (2022) - [j48]Mihaly Varadi
PDBe-KB: collaboratively defining the biological context of structural data. Nucleic Acids Res. 50(D1): 534-542 (2022) - [c2]Arian R. Jamasb, Ramón Viñas Torné, Eric Ma, Yuanqi Du, Charles Harris, Kexin Huang, Dominic Hall, Pietro Lió, Tom L. Blundell:
Graphein - a Python Library for Geometric Deep Learning and Network Analysis on Biomolecular Structures and Interaction Networks. NeurIPS 2022 - [i2]Arne Schneuing
Structure-based Drug Design with Equivariant Diffusion Models. CoRR abs/2210.13695 (2022) - 2021
- [j47]Ali F. Alsulami
SARS-CoV-2 3D database: understanding the coronavirus proteome and evaluating possible drug targets. Briefings Bioinform. 22(2): 769-780 (2021) - [j46]Ali F. Alsulami, Pedro H. M. Torres
COSMIC Cancer Gene Census 3D database: understanding the impacts of mutations on cancer targets. Briefings Bioinform. 22(6) (2021) - [j45]Thomas Gaudelet, Ben Day, Arian R. Jamasb, Jyothish Soman, Cristian Regep, Gertrude Liu, Jeremy B. R. Hayter, Richard Vickers, Charles Roberts, Jian Tang, David Roblin, Tom L. Blundell, Michael M. Bronstein, Jake P. Taylor-King
Utilizing graph machine learning within drug discovery and development. Briefings Bioinform. 22(6) (2021) - [j44]Pedro H. M. Torres
ProtCHOIR: a tool for proteome-scale generation of homo-oligomers. Briefings Bioinform. 22(6) (2021) - [j43]Octav Caldararu
A base measure of precision for protein stability predictors: structural sensitivity. BMC Bioinform. 22(1): 88 (2021) - [j42]Octav Caldararu, Tom L. Blundell, Kasper P. Kepp
Three Simple Properties Explain Protein Stability Change upon Mutation. J. Chem. Inf. Model. 61(4): 1981-1988 (2021) - 2020
- [j41]Peter R. Curran
Hotspots API: A Python Package for the Detection of Small Molecule Binding Hotspots and Application to Structure-Based Drug Design. J. Chem. Inf. Model. 60(4): 1911-1916 (2020) - [j40]Octav Caldararu, Rukmankesh Mehra
Systematic Investigation of the Data Set Dependency of Protein Stability Predictors. J. Chem. Inf. Model. 60(10): 4772-4784 (2020) - [j39]Ian Sillitoe
Genome3D: integrating a collaborative data pipeline to expand the depth and breadth of consensus protein structure annotation. Nucleic Acids Res. 48(Database-Issue): D314-D319 (2020) - [j38]Mihaly Varadi
PDBe-KB: a community-driven resource for structural and functional annotations. Nucleic Acids Res. 48(Database-Issue): D344-D353 (2020) - [j37]Liviu Copoiu
ProCarbDB: a database of carbohydrate-binding proteins. Nucleic Acids Res. 48(Database-Issue): D368-D375 (2020) - [i1]Thomas Gaudelet, Ben Day, Arian R. Jamasb, Jyothish Soman, Cristian Regep, Gertrude Liu, Jeremy B. R. Hayter, Richard Vickers, Charles Roberts, Jian Tang, David Roblin, Tom L. Blundell, Michael M. Bronstein, Jake P. Taylor-King:
Utilising Graph Machine Learning within Drug Discovery and Development. CoRR abs/2012.05716 (2020)
2010 – 2019
- 2019
- [j36]Marcin J. Skwark
Mabellini: a genome-wide database for understanding the structural proteome and evaluating prospective antimicrobial targets of the emerging pathogen Mycobacterium abscessus. Database J. Biol. Databases Curation 2019: baz113 (2019) - 2017
- [j35]Sony Malhotra, Grace Mugumbate, Tom L. Blundell, Alicia P. Higueruelo
TIBLE: a web-based, freely accessible resource for small-molecule binding data for mycobacterial species. Database J. Biol. Databases Curation 2017: bax041 (2017) - [j34]Arun Prasad Pandurangan
SDM: a server for predicting effects of mutations on protein stability. Nucleic Acids Res. 45(Webserver-Issue): W229-W235 (2017) - [j33]Bernardo Ochoa-Montaño
XSuLT: a web server for structural annotation and representation of sequence-structure alignments. Nucleic Acids Res. 45(Webserver-Issue): W381-W387 (2017) - 2015
- [j32]Rahul Metri, Sridhar Hariharaputran
SInCRe - structural interactome computational resource for Mycobacterium tuberculosis. Database J. Biol. Databases Curation 2015 (2015) - [j31]Bernardo Ochoa-Montaño, Nishita Mohan, Tom L. Blundell:
CHOPIN: a web resource for the structural and functional proteome of Mycobacterium tuberculosis. Database J. Biol. Databases Curation 2015 (2015) - [j30]Tony E. Lewis, Ian Sillitoe, Antonina Andreeva
Genome3D: exploiting structure to help users understand their sequences. Nucleic Acids Res. 43(Database-Issue): 382-386 (2015) - [j29]Douglas E. V. Pires
Platinum: a database of experimentally measured effects of mutations on structurally defined protein-ligand complexes. Nucleic Acids Res. 43(Database-Issue): 387-391 (2015) - 2014
- [j28]Douglas E. V. Pires
mCSM: predicting the effects of mutations in proteins using graph-based signatures. Bioinform. 30(3): 335-342 (2014) - [j27]William R. Pitt
Polyphony: superposition independent methods for ensemble-based drug discovery. BMC Bioinform. 15: 324 (2014) - [j26]Pedro J. Ballester
Does a More Precise Chemical Description of Protein-Ligand Complexes Lead to More Accurate Prediction of Binding Affinity? J. Chem. Inf. Model. 54(3): 944-955 (2014) - [j25]Douglas E. V. Pires
DUET: a server for predicting effects of mutations on protein stability using an integrated computational approach. Nucleic Acids Res. 42(Webserver-Issue): 314-319 (2014) - 2013
- [j24]Alicia P. Higueruelo
TIMBAL v2: update of a database holding small molecules modulating protein-protein interactions. Database J. Biol. Databases Curation 2013 (2013) - [j23]Adrian Schreyer, Tom L. Blundell:
CREDO: a structural interactomics database for drug discovery. Database J. Biol. Databases Curation 2013 (2013) - [j22]Tony E. Lewis, Ian Sillitoe, Antonina Andreeva
Genome3D: a UK collaborative project to annotate genomic sequences with predicted 3D structures based on SCOP and CATH domains. Nucleic Acids Res. 41(Database-Issue): 499-507 (2013) - 2012
- [j21]Adrian Schreyer
USRCAT: real-time ultrafast shape recognition with pharmacophoric constraints. J. Cheminformatics 4: 27 (2012) - 2011
- [j20]George R. Bickerton, Alicia P. Higueruelo
Comprehensive, atomic-level characterization of structurally characterized protein-protein interactions: the PICCOLO database. BMC Bioinform. 12: 313 (2011) - [j19]Catherine L. Worth
SDM - a server for predicting effects of mutations on protein stability and malfunction. Nucleic Acids Res. 39(Web-Server-Issue): 215-222 (2011)
2000 – 2009
- 2009
- [j18]Semin Lee, Tom L. Blundell:
BIPA: a database for protein-nucleic acid interaction in 3D structures. Bioinform. 25(12): 1559-1560 (2009) - [j17]Semin Lee, Tom L. Blundell:
Ulla: a program for calculating environment-specific amino acid substitution tables. Bioinform. 25(15): 1976-1977 (2009) - 2008
- [j16]Tammy M. K. Cheng, Tom L. Blundell, Juan Fernández-Recio
Structural assembly of two-domain proteins by rigid-body docking. BMC Bioinform. 9 (2008) - [j15]Tammy M. K. Cheng, Yu-En Lu, Michele Vendruscolo
Prediction by Graph Theoretic Measures of Structural Effects in Proteins Arising from Non-Synonymous Single Nucleotide Polymorphisms. PLoS Comput. Biol. 4(7) (2008) - [j14]Sungsam Gong
Discarding Functional Residues from the Substitution Table Improves Predictions of Active Sites within Three-Dimensional Structures. PLoS Comput. Biol. 4(10) (2008) - 2007
- [j13]Richard E. Smith, Simon C. Lovell
Andante: reducing side-chain rotamer search space during comparative modeling using environment-specific substitution probabilities. Bioinform. 23(9): 1099-1105 (2007) - [j12]David F. Burke
Genome bioinformatic analysis of nonsynonymous SNPs. BMC Bioinform. 8 (2007) - [j11]Catherine L. Worth
A Structural Bioinformatics Approach to the Analysis of nonsynonymous Single nucleotide polymorphisms (nsSNPS) and their Relation to Disease. J. Bioinform. Comput. Biol. 5(6): 1297-1318 (2007) - 2005
- [j10]Swanand P. Gore
PROVAT: a tool for Voronoi tessellation analysis of protein structures and complexes. Bioinform. 21(15): 3316-3317 (2005) - [j9]Rinaldo W. Montalvão
CHORAL: a differential geometry approach to the prediction of the cores of protein structures. Bioinform. 21(19): 3719-3725 (2005) - [j8]Swanand P. Gore, David F. Burke, Tom L. Blundell:
PROVAT - a versatile tool for Voronoi tessellation analysis of protein structures and complexes. BMC Bioinform. 6(S-3) (2005) - 2003
- [j7]A. Vinayagam, Jiye Shi
DDBASE2.0: updated domain database with improved identification of structural domains. Bioinform. 19(14): 1760-1764 (2003) - 2001
- [j6]Charlotte M. Deane
SCORE: predicting the core of protein models. Bioinform. 17(6): 541-550 (2001) - [j5]Paul I. W. de Bakker, Alex Bateman, David F. Burke
HOMSTRAD: adding sequence information to structure-based alignments of homologous protein families. Bioinform. 17(8): 748-749 (2001) - 2000
- [j4]David F. Burke
Browsing the SLoop database of structurally classified loops connecting elements of protein secondary structure. Bioinform. 16(6): 513-519 (2000) - [j3]Kenji Mizuguchi
Analysis of conservation and substitutions of secondary structure elements within protein superfamilies. Bioinform. 16(12): 1111-1119 (2000)
1990 – 1999
- 1998
- [j2]Kenji Mizuguchi
JOY: protein sequence-structure representation and analysis. Bioinform. 14(7): 617-623 (1998) - 1995
- [c1]Zhirong Sun, Tom L. Blundell:
The pattern of common supersecondary structure (motifs) in protein database. HICSS (5) 1995: 312-318 - 1994
- [j1]Stephen D. Rufino, Tom L. Blundell:
Structure-based identification and clustering of protein families and superfamilies. J. Comput. Aided Mol. Des. 8(1): 5-27 (1994)
Coauthor Index
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last updated on 2024-10-07 21:23 CEST by the dblp team
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