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Sarah A. Killcoyne
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2010 – 2019
- 2014
- [j9]Sarah A. Killcoyne, Antonio del Sol:
FIGG: Simulating populations of whole genome sequences for heterogeneous data analyses. BMC Bioinform. 15: 149 (2014) - 2012
- [j8]Sarah A. Killcoyne, Jeremy Handcock, Thomas Robinson, Eric W. Deutsch, John Boyle:
Interfaces to PeptideAtlas: a case study of standard data access systems. Briefings Bioinform. 13(5): 615-626 (2012) - [j7]John Boyle, Richard Kreisberg, Ryan Bressler, Sarah A. Killcoyne:
Methods for visual mining of genomic and proteomic data atlases. BMC Bioinform. 13: 58 (2012) - [j6]Steven Lewis, Attila Csordas, Sarah A. Killcoyne, Henning Hermjakob, Michael R. Hoopmann, Robert L. Moritz, Eric W. Deutsch, John Boyle:
Hydra: a scalable proteomic search engine which utilizes the Hadoop distributed computing framework. BMC Bioinform. 13: 324 (2012) - 2010
- [j5]David B. Burdick, Christopher C. Cavnor, Jeremy Handcock, Sarah A. Killcoyne, Jake Lin, Bruz Marzolf, Stephen A. Ramsey, Hector Rovira, Ryan Bressler, Ilya Shmulevich, John Boyle:
SEQADAPT: an adaptable system for the tracking, storage and analysis of high throughput sequencing experiments. BMC Bioinform. 11: 377 (2010) - [c2]Steven Lewis, Sheila Reynolds, Hector Rovira, Mike O'Leary, Sarah A. Killcoyne, Ilya Shmulevich, John Boyle:
Howdah - A Flexible Pipeline Framework for Analyzing Genomic Data. CloudCom 2010: 776-779 - [c1]Hector Rovira, Sarah A. Killcoyne, Ilya Shmulevich, John Boyle:
An Integration Architecture Designed to Deal with the Issues of Biological Scope, Scale and Complexity. DILS 2010: 179-191
2000 – 2009
- 2009
- [j4]John Boyle, Hector Rovira, Christopher C. Cavnor, David B. Burdick, Sarah A. Killcoyne, Ilya Shmulevich:
Adaptable data management for systems biology investigations. BMC Bioinform. 10 (2009) - [j3]Sarah A. Killcoyne, John Boyle:
Managing Chaos: Lessons Learned Developing Software in the Life Sciences. Comput. Sci. Eng. 11(6): 20-29 (2009) - 2008
- [j2]John Boyle, Christopher C. Cavnor, Sarah A. Killcoyne, Ilya Shmulevich:
Systems biology driven software design for the research enterprise. BMC Bioinform. 9 (2008) - 2007
- [j1]Erin M. Hulbert, Luc J. Smink, Ellen C. Adlem, James E. Allen, David B. Burdick, Oliver S. Burren, Christopher C. Cavnor, Geoffrey E. Dolman, Daisy Flamez, Karen F. Friery, Barry C. Healy, Sarah A. Killcoyne, Burak Kutlu, Helen Schuilenburg, Neil M. Walker, Josyf Mychaleckyj, Decio L. Eizirik, Linda S. Wicker, John A. Todd, Nathan Goodman:
T1DBase: integration and presentation of complex data for type 1 diabetes research. Nucleic Acids Res. 35(Database-Issue): 742-746 (2007)
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