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Aurélien Naldi
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2020 – today
- 2023
- [j14]Aurélien Naldi
, Adrien Richard, Elisa Tonello:
Linear cuts in Boolean networks. Nat. Comput. 22(3): 431-451 (2023) - 2022
- [j13]Bilal Shaikh
BioSimulators: a central registry of simulation engines and services for recommending specific tools. Nucleic Acids Res. 50(W1): 108-114 (2022) - [i2]Aurélien Naldi, Adrien Richard, Elisa Tonello:
Linear cuts in Boolean networks. CoRR abs/2203.01620 (2022) - [i1]Bilal Shaikh, Lucian P. Smith, Dan Vasilescu, Gnaneswara Marupilla, Michael Wilson, Eran Agmon, Henry Agnew, Steven S. Andrews, Azraf Anwar, Moritz E. Beber, Frank T. Bergmann, David Brooks, Lutz Brusch, Laurence Calzone, Kiri Choi, Joshua Cooper, John Detloff, Brian Drawert, Michel Dumontier, G. Bard Ermentrout, James R. Faeder, Andrew P. Freiburger, Fabian Fröhlich
BioSimulators: a central registry of simulation engines and services for recommending specific tools. CoRR abs/2203.06732 (2022) - 2021
- [j12]Anna Niarakis
Setting the basis of best practices and standards for curation and annotation of logical models in biology - highlights of the [BC]2 2019 CoLoMoTo/SysMod Workshop. Briefings Bioinform. 22(2): 1848-1859 (2021) - [c7]Marion Buffard, Aurélien Desoeuvres
LNetReduce: Tool for Reducing Linear Dynamic Networks with Separated Timescales. CMSB 2021: 238-244 - 2020
- [j11]Sara Sadat Aghamiri
Automated inference of Boolean models from molecular interaction maps using CaSQ. Bioinform. 36(16): 4473-4482 (2020)
2010 – 2019
- 2017
- [j10]Gautier Stoll
MaBoSS 2.0: an environment for stochastic Boolean modeling. Bioinform. 33(14): 2226-2228 (2017) - [j9]Aurélien Naldi
Reconstruction and signal propagation analysis of the Syk signaling network in breast cancer cells. PLoS Comput. Biol. 13(3) (2017) - 2016
- [j8]Satya Swarup Samal
Geometric analysis of pathways dynamics: Application to versatility of TGF-β receptors. Biosyst. 149: 3-14 (2016) - 2015
- [j7]Aurélien Naldi
Cooperative development of logical modelling standards and tools with CoLoMoTo. Bioinform. 31(7): 1154-1159 (2015) - [j6]Claudine Chaouiya
The Systems Biology Markup Language (SBML) Level 3 Package: Qualitative Models, Version 1, Release 1. J. Integr. Bioinform. 12(2) (2015) - [c6]Ovidiu Radulescu, Satya Swarup Samal, Aurélien Naldi
Symbolic Dynamics of Biochemical Pathways as Finite States Machines. CMSB 2015: 104-120 - 2013
- [j5]Claudine Chaouiya
SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools. BMC Syst. Biol. 7: 135 (2013) - 2012
- [c5]Aurélien Naldi
Efficient Handling of Large Signalling-Regulatory Networks by Focusing on Their Core Control. CMSB 2012: 288-306 - 2011
- [j4]Claudine Chaouiya
Petri net representation of multi-valued logical regulatory graphs. Nat. Comput. 10(2): 727-750 (2011) - [j3]Aurélien Naldi
Dynamically consistent reduction of logical regulatory graphs. Theor. Comput. Sci. 412(21): 2207-2218 (2011) - 2010
- [j2]Aurélien Naldi
Diversity and Plasticity of Th Cell Types Predicted from Regulatory Network Modelling. PLoS Comput. Biol. 6(9) (2010) - [c4]Claudine Chaouiya
Reduction of Logical Models of Regulatory Networks Yields Insight into Dynamical properties. CCA 2010: 524-529
2000 – 2009
- 2009
- [j1]Aurélien Naldi
Logical modelling of regulatory networks with GINsim 2.3. Biosyst. 97(2): 134-139 (2009) - [c3]Aurélien Naldi
A Reduction of Logical Regulatory Graphs Preserving Essential Dynamical Properties. CMSB 2009: 266-280 - 2007
- [c2]Aurélien Naldi
Decision Diagrams for the Representation and Analysis of Logical Models of Genetic Networks. CMSB 2007: 233-247 - 2006
- [c1]Adrien Fauré
Dynamical analysis of a generic Boolean model for the control of the mammalian cell cycle. ISMB (Supplement of Bioinformatics) 2006: 124-131
Coauthor Index
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