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Terence P. Speed
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2020 – today
- 2022
- [j35]Terence P. Speed, Damien G. Hicks
:
Spectral PCA for MANOVA and data over binary trees. J. Multivar. Anal. 188: 104905 (2022) - 2020
- [j34]Anna Quaglieri
Finding a suitable library size to call variants in RNA-Seq. BMC Bioinform. 21(1): 553 (2020)
2010 – 2019
- 2019
- [j33]Timothy J. Peters, Hugh J. French
Evaluation of cross-platform and interlaboratory concordance via consensus modelling of genomic measurements. Bioinform. 35(4): 560-570 (2019) - [j32]Chengzhong Ye, Terence P. Speed, Agus Salim:
DECENT: differential expression with capture efficiency adjustmeNT for single-cell RNA-seq data. Bioinform. 35(24): 5155-5162 (2019) - [j31]Damien G. Hicks
Maps of variability in cell lineage trees. PLoS Comput. Biol. 15(2) (2019) - 2015
- [j30]Saskia Freytag
Systematic noise degrades gene co-expression signals but can be corrected. BMC Bioinform. 16: 309:1-309:17 (2015) - 2014
- [j29]Su Yeon Kim, Laurent Jacob, Terence P. Speed:
Combining calls from multiple somatic mutation-callers. BMC Bioinform. 15: 154 (2014) - 2013
- [j28]Su Yeon Kim, Terence P. Speed:
Comparing somatic mutation-callers: Beyond Venn diagrams. BMC Bioinform. 14: 189 (2013) - 2012
- [j27]Nianxiang Zhang, Yan Xu, Martin O'Hely
SRMA: an R package for resequencing array data analysis. Bioinform. 28(14): 1928-1930 (2012) - [j26]Steven M. Hill
Bayesian Inference of Signaling Network Topology in a Cancer Cell Line. Bioinform. 28(21): 2804-2810 (2012) - 2011
- [j25]Ben J. Woodcroft
An integrative bioinformatic predictor of protein sub-cellular localisation in malaria. BMC Bioinform. 12(S-11): A6 (2011) - [j24]Wenyi Wang
Identification of rare DNA variants in mitochondrial disorders with improved array-based sequencing. Nucleic Acids Res. 39(1): 44-58 (2011) - 2010
- [j23]Henrik Bengtsson
TumorBoost: Normalization of allele-specific tumor copy numbers from a single pair of tumor-normal genotyping microarrays. BMC Bioinform. 11: 245 (2010) - [j22]Doron Lipson, Terence P. Speed, Margaret Taub:
Methods for Allocating Ambiguous Short-reads. Commun. Inf. Syst. 10(2): 69-82 (2010)
2000 – 2009
- 2009
- [j21]Sach Mukherjee, Steven Pelech, Richard M. Neve, Wen-Lin Kuo, Safiyyah Ziyad, Paul T. Spellman, Joe W. Gray, Terence P. Speed:
Sparse combinatorial inference with an application in cancer biology. Bioinform. 25(2): 265-271 (2009) - [j20]Henrik Bengtsson
A single-sample method for normalizing and combining full-resolution copy numbers from multiple platforms, labs and analysis methods. Bioinform. 25(7): 861-867 (2009) - [j19]Henrik Bengtsson
A single-array preprocessing method for estimating full-resolution raw copy numbers from all Affymetrix genotyping arrays including GenomeWideSNP 5 & 6. Bioinform. 25(17): 2149-2156 (2009) - [j18]Mark D. Robinson
Differential splicing using whole-transcript microarrays. BMC Bioinform. 10 (2009) - [j17]Yunxia Sui, Xiaoyue Zhao, Terence P. Speed, Zhijin Wu
Background Adjustment for DNA Microarrays Using a Database of Microarray Experiments. J. Comput. Biol. 16(11): 1501-1515 (2009) - 2008
- [j16]Henrik Bengtsson
Estimation and assessment of raw copy numbers at the single locus level. Bioinform. 24(6): 759-767 (2008) - [j15]E. Purdom, Ken M. Simpson, Mark D. Robinson
FIRMA: a method for detection of alternative splicing from exon array data. Bioinform. 24(15): 1707-1714 (2008) - [j14]Julia Brettschneider
Quality Assessment for Short Oligonucleotide Microarray Data. Technometrics 50(3): 241-264 (2008) - [j13]Julia Brettschneider, François Collin, Benjamin M. Bolstad, Terence P. Speed:
Rejoinder. Technometrics 50(3): 279-283 (2008) - 2007
- [j12]Mark D. Robinson
A comparison of Affymetrix gene expression arrays. BMC Bioinform. 8 (2007) - [j11]Mark D. Robinson
A dynamic programming approach for the alignment of signal peaks in multiple gas chromatography-mass spectrometry experiments. BMC Bioinform. 8 (2007) - [e1]Terence P. Speed, Haiyan Huang:
Research in Computational Molecular Biology, 11th Annual International Conference, RECOMB 2007, Oakland, CA, USA, April 21-25, 2007, Proceedings. Lecture Notes in Computer Science 4453, Springer 2007, ISBN 3-540-71680-7 [contents] - 2006
- [j10]Nusrat Rabbee, Terence P. Speed:
A genotype calling algorithm for affymetrix SNP arrays. Bioinform. 22(1): 7-12 (2006) - 2005
- [j9]Xiaoyue Zhao, Haiyan Huang, Terence P. Speed:
Finding Short DNA Motifs Using Permuted Markov Models. J. Comput. Biol. 12(6): 894-906 (2005) - [c5]Tim Beißbarth, Jason A. Tye-Din
A systematic approach for comprehensive T-cell epitope discovery using peptide libraries. ISMB (Supplement of Bioinformatics) 2005: 29-37 - 2004
- [j8]Leslie Cope, Rafael A. Irizarry, Harris A. Jaffee, Zhijin Wu
A benchmark for Affymetrix GeneChip expression measures. Bioinform. 20(3): 323-331 (2004) - [c4]Xiaoyue Zhao, Haiyan Huang, Terence P. Speed:
Finding short DNA motifs using permuted markov models. RECOMB 2004: 68-75 - 2003
- [j7]Benjamin M. Bolstad, Rafael A. Irizarry, Magnus Åstrand, Terence P. Speed:
A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinform. 19(2): 185-193 (2003) - [j6]Benjamin I. P. Rubinstein, Jon D. McAuliffe, Simon Cawley, Marimuthu Palaniswami, Kotagiri Ramamohanarao, Terence P. Speed:
Machine learning in low-level microarray analysis. SIGKDD Explor. 5(2): 130-139 (2003) - [c3]Terence P. Speed:
Low-level analyses of microarray data. RECOMB 2003: 287-287 - 2002
- [j5]Mauro Delorenzi, Terence P. Speed:
An HMM model for coiled-coil domains and a comparison with PSSM-based predictions. Bioinform. 18(4): 617-625 (2002) - 2001
- [j4]Yee Hwa Yang
Analysis of CDNA Microarray Images. Briefings Bioinform. 2(4): 341-349 (2001) - 2000
- [j3]Simon Cawley, Terence P. Speed:
DNA Sequencing with Transposons. J. Comput. Biol. 7(5): 717-729 (2000)
1990 – 1999
- 1997
- [j2]Shili Lin, Terence P. Speed:
An Algorithm for Haplotype Analysis. J. Comput. Biol. 4(4): 535-546 (1997) - [c2]Shili Lin, Terence P. Speed:
An algorithm for haplotype analysis. RECOMB 1997: 192-200 - [c1]Terence P. Speed:
Variations on a theme of Lander and Waterman (abstract). RECOMB 1997: 293 - 1996
- [j1]Ming-Ying Leung
Over- and Underrepresentation of Short DNA Words in Herpesvirus Genomes. J. Comput. Biol. 3(3): 345-360 (1996)
Coauthor Index
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