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Edward C. Uberbacher
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2010 – 2019
- 2016
- [j17]Steven W. Paugh, David R. Coss, Ju Bao, Lucas T. Laudermilk, Christy R. Grace, Antonio M. Ferreira, M. Brett Waddell, Granger Ridout, Deanna Naeve, Michael R. Leuze, Philip F. LoCascio, John C. Panetta, Mark R. Wilkinson, Ching-Hon Pui, Clayton W. Naeve, Edward C. Uberbacher, Erik J. Bonten, William E. Evans:
MicroRNAs Form Triplexes with Double Stranded DNA at Sequence-Specific Binding Sites; a Eukaryotic Mechanism via which microRNAs Could Directly Alter Gene Expression. PLoS Comput. Biol. 12(2) (2016) - 2012
- [j16]Mustafa H. Syed, Tatiana V. Karpinets, Morey Parang, Michael R. Leuze, Byung-Hoon Park, Doug Hyatt, Steven D. Brown, Steve Moulton, Michael D. Galloway, Edward C. Uberbacher:
BESC knowledgebase public portal. Bioinform. 28(5): 750-751 (2012) - [j15]Doug Hyatt, Philip F. LoCascio, Loren J. Hauser, Edward C. Uberbacher:
Gene and translation initiation site prediction in metagenomic sequences. Bioinform. 28(17): 2223-2230 (2012) - 2010
- [j14]Tatiana V. Karpinets, Margaret F. Romine, Denise Schmoyer, Guruprasad Kora, Mustafa H. Syed, Michael R. Leuze, Margrethe H. Serres, Byung-Hoon Park, Nagiza F. Samatova, Edward C. Uberbacher:
Shewanella knowledgebase: integration of the experimental data and computational predictions suggests a biological role for transcription of intergenic regions. Database J. Biol. Databases Curation 2010 (2010)
2000 – 2009
- 2003
- [j13]Chandrasegaran Narasimhan, Philip F. LoCascio, Edward C. Uberbacher:
Background rareness-based iterative multiple sequence alignment algorithm for regulatory element detection. Bioinform. 19(15): 1952-1963 (2003) - [c12]Marvin Frazier, David Thomassen, Aristides Patrinos, Gary Johnson, Carl Edward Oliver, Edward C. Uberbacher:
Stepping Up the Pace of Discovery: the Genomes to Life Program. CSB 2003: 2-9 - [c11]Edward C. Uberbacher, David Thomassen, Aristides Patrinos, Gary Johnson, Carl Edward Oliver, Marvin Frazier:
Computing for the DOE Genomes to Life Program. CSB 2003: 32 - [c10]Jane Razumovskaya, Victor Olman, Dong Xu, Edward C. Uberbacher, Nathan Verberkmoes, Ying Xu:
A Computational Method for Assessing Peptide-Identification Reliability in Tandem Mass Spectrometry Analysis with SEQUEST. CSB 2003: 421-423 - 2000
- [j12]Dong Xu, Michael A. Unseren, Ying Xu, Edward C. Uberbacher:
Sequence-structure specificity of a knowledge based energy function at the secondary structure level. Bioinform. 16(3): 269-285 (2000)
1990 – 1999
- 1998
- [j11]Ying Xu, Dong Xu, Edward C. Uberbacher:
An Efficient Computational Method for Globally Optimal Threading. J. Comput. Biol. 5(3): 597-614 (1998) - [j10]Ying Xu, Victor Olman, Edward C. Uberbacher:
A segmentation algorithm for noisy images: Design and evaluation. Pattern Recognit. Lett. 19(13): 1213-1224 (1998) - [c9]Ying Xu, Dong Xu, Edward C. Uberbacher:
A new method for modeling and solving the protein fold recognition problem (extended abstract). RECOMB 1998: 285-292 - 1997
- [j9]Ying Xu, Edward C. Uberbacher:
2D image segmentation using minimum spanning trees. Image Vis. Comput. 15(1): 47-57 (1997) - [j8]Ying Xu, Edward C. Uberbacher:
Automated Gene Identification in Large-Scale Genomic Sequences. J. Comput. Biol. 4(3): 325-338 (1997) - [c8]Ying Xu, Richard J. Mural, Edward C. Uberbacher:
Inferring Gene Structures in Genomic Sequences Using Pattern Recognition and Expressed Sequence Tags. ISMB 1997: 344-353 - [c7]Ying Xu, Edward C. Uberbacher:
Reference-based gene model prediction on DNA contigs (extended abstract). RECOMB 1997: 330-336 - 1996
- [j7]Xiaojun Guan, Edward C. Uberbacher:
Alignments of DNA and protein sequences containing frameshift errors. Comput. Appl. Biosci. 12(1): 31-40 (1996) - [j6]Ying Xu, Edward C. Uberbacher:
A polynomial-time algorithm for a class of protein threading problems. Comput. Appl. Biosci. 12(6): 511-517 (1996) - [j5]Sherri Matis, Ying Xu, Manesh J. Shah, Xiaojun Guan, J. Ralph Einstein, Richard J. Mural, Edward C. Uberbacher:
Detection of RNA Polymerase II Promoters and Polyadenylation Sites in Human DNA Sequence. Comput. Chem. 20(1): 135-140 (1996) - [j4]Ying Xu, Richard J. Mural, Edward C. Uberbacher:
An Iterative Algorithm for Correcting Sequencing Errors in DNA Coding Regions. J. Comput. Biol. 3(3): 333-344 (1996) - [j3]Ying Xu, Richard J. Mural, J. Ralph Einstein, Manesh B. Shah, Edward C. Uberbacher:
GRAIL: a multi-agent neural network system for gene identification. Proc. IEEE 84(10): 1544-1552 (1996) - [c6]Ying Xu, Edward C. Uberbacher:
Gene Prediction by Pattern Recognition and Homology Search. ISMB 1996: 241-251 - 1995
- [j2]Ying Xu, Richard J. Mural, Edward C. Uberbacher:
Correcting sequencing errors in DNA coding regions using a dynamic programming approach. Comput. Appl. Biosci. 11(2): 117-124 (1995) - [c5]Sherri Matis, Howard Doyle, Ignazio Marino, Richard J. Mural, Edward C. Uberbacher:
Use of Neural Networks for Prediction of Graft Failure following Liver Transplantation. CBMS 1995: 133- - [c4]Xiaojun Guan, Richard J. Mural, Edward C. Uberbacher:
Sequence comparison on a cluster of workstations using the PVM system. IPPS 1995: 190-195 - [c3]Mark Craven, Richard J. Mural, Loren J. Hauser, Edward C. Uberbacher:
Predicting Protein Folding Classes without Overly Relying on Homology. ISMB 1995: 98-106 - 1994
- [j1]Ying Xu, Richard J. Mural, Edward C. Uberbacher:
Constructing gene models from accurately predicted exons: an application of dynamic programming. Comput. Appl. Biosci. 10(6): 613-623 (1994) - [c2]Yin Xu, J. Ralph Einstein, Richard J. Mural, Manesh J. Shah, Edward C. Uberbacher:
An Improved System for Exon Recognition and Gene Modeling in Human DNA Sequence. ISMB 1994: 376- - 1991
- [c1]Xiaojun Guan, Richard J. Mural, Reinhold Mann, Edward C. Uberbacher:
On Parallel Search of DNA Sequence Databases. PP 1991: 332-337
Coauthor Index
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