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Daniel J. B. Clarke
Person information
- affiliation: Icahn School of Medicine at Mount Sinai, New York, NY, USA
- affiliation: Fairleigh Dickinson University, Teaneck, NJ, USA
Other persons with the same name
- Daniel Clarke — disambiguation page
- Daniel Clarke 0001 — Cranfield University, Shrivenham Campus, Swindon, UK (and 3 more)
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2020 – today
- 2024
- [j15]Giacomo B. Marino, Daniel J. B. Clarke, Alexander Lachmann, Eden Z. Deng, Avi Ma'ayan:
RummaGEO: Automatic mining of human and mouse gene sets from GEO. Patterns 5(10): 101072 (2024) - 2023
- [j14]Giacomo B. Marino, Megan L. Wojciechowicz, Daniel J. B. Clarke, Maxim V. Kuleshov, Zhuorui Xie, Minji Jeon, Alexander Lachmann, Avi Ma'ayan:
lncHUB2: aggregated and inferred knowledge about human and mouse lncRNAs. Database J. Biol. Databases Curation 2023 (2023) - [j13]John Erol Evangelista, Zhuorui Xie, Giacomo B. Marino, Nhi Nguyen, Daniel J. B. Clarke, Avi Ma'ayan:
Enrichr-KG: bridging enrichment analysis across multiple libraries. Nucleic Acids Res. 51(W1): 168-179 (2023) - [j12]Giacomo B. Marino, Michael Ngai, Daniel J. B. Clarke, Reid H. Fleishman, Eden Z. Deng, Zhuorui Xie, Nasheath Ahmed, Avi Ma'ayan:
GeneRanger and TargetRanger: processed gene and protein expression levels across cells and tissues for target discovery. Nucleic Acids Res. 51(W1): 213-224 (2023) - [i2]A. Ravishankar Rao, Daniel J. B. Clarke, Subrata Garai, Soumyabrata Dey:
A system for exploring big data: an iterative k-means searchlight for outlier detection on open health data. CoRR abs/2304.02189 (2023) - 2022
- [j11]Eryk Kropiwnicki, Alexander Lachmann, Daniel J. B. Clarke, Zhuorui Xie, Kathleen M. Jagodnik, Avi Ma'ayan:
DrugShot: querying biomedical search terms to retrieve prioritized lists of small molecules. BMC Bioinform. 23(1): 76 (2022) - [j10]Minji Jeon, Zhuorui Xie, John Erol Evangelista, Megan L. Wojciechowicz, Daniel J. B. Clarke, Avi Ma'ayan:
Transforming L1000 profiles to RNA-seq-like profiles with deep learning. BMC Bioinform. 23(1): 374 (2022) - [j9]John Erol Evangelista, Daniel J. B. Clarke, Zhuorui Xie, Alexander Lachmann, Minji Jeon, Kerwin Chen, Kathleen M. Jagodnik, Sherry L. Jenkins, Maxim V. Kuleshov, Megan L. Wojciechowicz, Stephan C. Schürer, Mario Medvedovic, Avi Ma'ayan:
SigCom LINCS: data and metadata search engine for a million gene expression signatures. Nucleic Acids Res. 50(W1): 697-709 (2022) - 2021
- [j8]Eryk Kropiwnicki, John Erol Evangelista, Daniel J. Stein, Daniel J. B. Clarke, Alexander Lachmann, Maxim V. Kuleshov, Minji Jeon, Kathleen M. Jagodnik, Avi Ma'ayan:
Drugmonizome and Drugmonizome-ML: integration and abstraction of small molecule attributes for drug enrichment analysis and machine learning. Database J. Biol. Databases Curation 2021 (2021) - [j7]Daniel J. B. Clarke, Minji Jeon, Daniel J. Stein, Nicole Moiseyev, Eryk Kropiwnicki, Charles Dai, Zhuorui Xie, Megan L. Wojciechowicz, Skylar Litz, Jason Hom, John Erol Evangelista, Lucas Goldman, Serena Zhang, Christine Yoon, Tahmid Ahamed, Samantha Bhuiyan, Minxuan Cheng, Julie Karam, Kathleen M. Jagodnik, Ingrid Shu, Alexander Lachmann, Sam Ayling, Sherry L. Jenkins, Avi Ma'ayan:
Appyters: Turning Jupyter Notebooks into data-driven web apps. Patterns 2(3): 100213 (2021) - 2020
- [j6]Alon Bartal, Alexander Lachmann, Daniel J. B. Clarke, Allison H. Seiden, Kathleen M. Jagodnik, Avi Ma'ayan:
EnrichrBot: Twitter bot tracking tweets about human genes. Bioinform. 36(12): 3932-3934 (2020) - [j5]A. Ravishankar Rao, Daniel Clarke:
Perspectives on emerging directions in using IoT devices in blockchain applications. Internet Things 10: 100079 (2020) - [j4]Vasileios Stathias, John Paul Turner, Amar Koleti, Dusica Vidovic, Daniel J. Cooper, Mehdi Fazel-Najafabadi, Marcin Pilarczyk, Raymond Terryn, Caty Chung, Afoma Umeano, Daniel J. B. Clarke, Alexander Lachmann, John Erol Evangelista, Avi Ma'ayan, Mario Medvedovic, Stephan C. Schürer:
LINCS Data Portal 2.0: next generation access point for perturbation-response signatures. Nucleic Acids Res. 48(Database-Issue): D431-D439 (2020) - [j3]Maxim V. Kuleshov, Daniel J. Stein, Daniel J. B. Clarke, Eryk Kropiwnicki, Kathleen M. Jagodnik, Alon Bartal, John Erol Evangelista, Jason Hom, Minxuan Cheng, Allison Bailey, Abigail Zhou, Laura B. Ferguson, Alexander Lachmann, Avi Ma'ayan:
The COVID-19 Drug and Gene Set Library. Patterns 1(6): 100090 (2020)
2010 – 2019
- 2019
- [c5]A. Ravishankar Rao, Daniel J. B. Clarke:
Capacity Building for a Cybersecurity Workforce Through Hands-on Labs for Internet-of-Things Security. NCS 2019: 14-29 - 2018
- [j2]A. Ravishankar Rao, Daniel Clarke, Maryelena Vargas:
Building an Open Health Data Analytics Platform: a Case Study Examining Relationships and Trends in Seniority and Performance in Healthcare Providers. J. Heal. Informatics Res. 2(1-2): 44-70 (2018) - [j1]Daniel J. B. Clarke, Maxim V. Kuleshov, Brian M. Schilder, Denis Torre, Mary E. Duffy, Alexandra B. Keenan, Alexander Lachmann, Axel S. Feldmann, Gregory W. Gundersen, Moshe C. Silverstein, Zichen Wang, Avi Ma'ayan:
eXpression2Kinases (X2K) Web: linking expression signatures to upstream cell signaling networks. Nucleic Acids Res. 46(Webserver-Issue): W171-W179 (2018) - [c4]A. Ravishankar Rao, Daniel Clarke:
A comparison of models to predict medical procedure costs from open public healthcare data. IJCNN 2018: 1-8 - [c3]A. Ravishankar Rao, Subrata Garai, Daniel J. B. Clarke, Soumyabrata Dey:
A system for exploring big data: an iterative k-means searchlight for outlier detection on open health data. IJCNN 2018: 1-8 - 2017
- [c2]A. Ravishankar Rao, Daniel J. B. Clarke:
An open-source framework for the interactive exploration of Big Data: Applications in understanding health care. IJCNN 2017: 1641-1648 - [i1]A. Ravishankar Rao, Daniel J. B. Clarke:
Hiding in plain sight: insights about health-care trends gained through open health data. CoRR abs/1710.11047 (2017) - 2016
- [c1]A. Ravishankar Rao, Daniel J. B. Clarke:
A fully integrated open-source toolkit for mining healthcare big-data: architecture and applications. ICHI 2016: 255-261
Coauthor Index
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last updated on 2024-10-18 19:31 CEST by the dblp team
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