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Shinichi Sunagawa
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2020 – today
- 2024
- [j11]Anna Sintsova, Hans-Joachim Ruscheweyh, Christopher M. Field, Lilith Feer, Bidong D. Nguyen, Benjamin Daniel, Wolf-Dietrich Hardt
, Julia A. Vorholt, Shinichi Sunagawa
mBARq: a versatile and user-friendly framework for the analysis of DNA barcodes from transposon insertion libraries, knockout mutants, and isogenic strain populations. Bioinform. 40(2) (2024) - 2023
- [j10]Anthony Fullam
proGenomes3: approaching one million accurately and consistently annotated high-quality prokaryotic genomes. Nucleic Acids Res. 51(D1): 760-766 (2023) - 2022
- [j9]Thea Van Rossum
metaSNV v2: detection of SNVs and subspecies in prokaryotic metagenomes. Bioinform. 38(4): 1162-1164 (2022) - [j8]Caroline Vernette
The Ocean Gene Atlas v2.0: online exploration of the biogeography and phylogeny of plankton genes. Nucleic Acids Res. 50(W1): 516-526 (2022) - 2021
- [j7]Guillem Salazar
mTAGs: taxonomic profiling using degenerate consensus reference sequences of ribosomal RNA genes. Bioinform. 38(1): 270-272 (2021) - 2020
- [j6]Daniel R. Mende
proGenomes2: an improved database for accurate and consistent habitat, taxonomic and functional annotations of prokaryotic genomes. Nucleic Acids Res. 48(Database-Issue): D621-D625 (2020)
2010 – 2019
- 2018
- [j5]Emilie Villar
The Ocean Gene Atlas: exploring the biogeography of plankton genes online. Nucleic Acids Res. 46(Webserver-Issue): W289-W295 (2018) - 2017
- [j4]Daniel R. Mende
proGenomes: a resource for consistent functional and taxonomic annotations of prokaryotic genomes. Nucleic Acids Res. 45(Database-Issue): D529-D534 (2017) - 2016
- [j3]Jens Roat Kultima, Luís Pedro Coelho
MOCAT2: a metagenomic assembly, annotation and profiling framework. Bioinform. 32(16): 2520-2523 (2016) - [j2]Jaime Huerta-Cepas
eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences. Nucleic Acids Res. 44(Database-Issue): 286-293 (2016) - 2015
- [j1]Kristoffer Forslund
Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota. Nat. 528(7582): 262-266 (2015)
Coauthor Index
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