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Dustin Machi
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2020 – today
- 2024
- [j10]Parantapa Bhattacharya, Dustin Machi, Jiangzhuo Chen, Stefan Hoops, Bryan Lewis, Henning S. Mortveit, Srinivasan Venkatramanan, Mandy L. Wilson, Achla Marathe, Przemyslaw J. Porebski, Brian Klahn, Joseph Outten, Anil Vullikanti, Dawen Xie, Abhijin Adiga, Shawn Brown, Christopher L. Barrett, Madhav V. Marathe:
Novel multi-cluster workflow system to support real-time HPC-enabled epidemic science: Investigating the impact of vaccine acceptance on COVID-19 spread. J. Parallel Distributed Comput. 191: 104899 (2024) - 2023
- [j9]Parantapa Bhattacharya
, Jiangzhuo Chen, Stefan Hoops, Dustin Machi, Bryan L. Lewis, Srinivasan Venkatramanan
Data-driven scalable pipeline using national agent-based models for real-time pandemic response and decision support. Int. J. High Perform. Comput. Appl. 37(1): 4-27 (2023) - [j8]Robert D. Olson, Rida Assaf, Thomas S. Brettin, Neal Conrad, Clark Cucinell, James J. Davis
Introducing the Bacterial and Viral Bioinformatics Resource Center (BV-BRC): a resource combining PATRIC, IRD and ViPR. Nucleic Acids Res. 51(D1): 678-689 (2023) - [c14]Swapna Thorve, Aparna Kishore, Dustin Machi, S. S. Ravi, Madhav V. Marathe:
A Network Synthesis and Analytics Pipeline with Applications to Sustainable Energy in Smart Grid. e-Science 2023: 1-10 - 2022
- [c13]Tanvir Ferdousi, Aparna Kishore, Lucas Machi, Dustin Machi, Chris J. Kuhlman, S. S. Ravi:
A Web-Based System for Contagion Simulations on Networked Populations. e-Science 2022: 306-315 - 2021
- [j7]Margo VanOeffelen, Marcus Nguyen, Derya Aytan-Aktug
A genomic data resource for predicting antimicrobial resistance from laboratory-derived antimicrobial susceptibility phenotypes. Briefings Bioinform. 22(6) (2021) - [c12]Parantapa Bhattacharya, Dustin Machi, Jiangzhuo Chen, Stefan Hoops, Bryan L. Lewis
AI-Driven Agent-Based Models to Study the Role of Vaccine Acceptance in Controlling COVID-19 Spread in the US. IEEE BigData 2021: 1566-1574 - [c11]Aparna Kishore, Lucas Machi, Chris J. Kuhlman, Dustin Machi, S. S. Ravi:
A Framework for Simulating Multiple Contagions Over Multiple Networks. COMPLEX NETWORKS 2021: 241-252 - [c10]Dustin Machi, Parantapa Bhattacharya, Stefan Hoops, Jiangzhuo Chen, Henning S. Mortveit, Srinivasan Venkatramanan, Bryan L. Lewis, Mandy L. Wilson, Arindam Fadikar, Tom Maiden, Christopher L. Barrett, Madhav V. Marathe:
Scalable Epidemiological Workflows to Support COVID-19 Planning and Response. IPDPS 2021: 639-650 - [c9]Golda Barrow, Chris J. Kuhlman, Dustin Machi, S. S. Ravi:
Interactive Demonstrations and Hands-On Use of thenet.science Cyberinfrastructure for Network Science Chairs' Welcome and Tutorial Summary. WebSci (Companion) 2021: 137 - [c8]Henry L. Carscadden, Lucas Machi, Aparna Kishore, Chris J. Kuhlman, Dustin Machi, S. S. Ravi:
ExecutionManager: A Software System to Control Execution of Third-Party Software that Performs Network Computations. WSC 2021: 1-12 - [c7]Henry L. Carscadden, Lucas Machi, Chris J. Kuhlman, Dustin Machi, S. S. Ravi:
GraphTrans: A Software System for Network Conversions for Simulation, Structural Analysis, and Graph Operations. WSC 2021: 1-12 - [c6]Joshua D. Priest, Aparna Kishore, Lucas Machi, Chris J. Kuhlman, Dustin Machi, S. S. Ravi:
CSonNet: An Agent-Based Modeling Software System for Discrete Time Simulation. WSC 2021: 1-12 - 2020
- [j6]James J. Davis, Alice R. Wattam, Ramy K. Aziz, Thomas S. Brettin, Ralph Butler, Rory Butler
The PATRIC Bioinformatics Resource Center: expanding data and analysis capabilities. Nucleic Acids Res. 48(Database-Issue): D606-D612 (2020) - [j5]Vanessa Cedeno-Mieles
Networked experiments and modeling for producing collective identity in a group of human subjects using an iterative abduction framework. Soc. Netw. Anal. Min. 10(1): 11 (2020) - [c5]Akhil Sai Peddireddy
From 5Vs to 6Cs: Operationalizing Epidemic Data Management with COVID-19 Surveillance. IEEE BigData 2020: 1380-1387
2010 – 2019
- 2019
- [j4]Dionysios A. Antonopoulos, Rida Assaf, Ramy Karam Aziz, Thomas S. Brettin, Christopher Bun, Neal Conrad, James J. Davis, Emily M. Dietrich, Terry Disz, Svetlana Gerdes, Ronald W. Kenyon, Dustin Machi, Chunhong Mao, Daniel E. Murphy-Olson, Eric K. Nordberg, Gary J. Olsen, Robert Olson, Ross A. Overbeek, Bruce D. Parrello, Gordon D. Pusch, John Santerre, Maulik Shukla
PATRIC as a unique resource for studying antimicrobial resistance. Briefings Bioinform. 20(4): 1094-1102 (2019) - [c4]Vanessa Cedeno-Mieles
Mechanistic and data-driven agent-based models to explain human behavior in online networked group anagram games. ASONAM 2019: 357-364 - [c3]Zhihao Hu
On the Modeling and Agent-Based Simulation of a Cooperative Group Anagram Game. WSC 2019: 169-180 - 2018
- [c2]Yihui Ren
Generative Modeling of Human Behavior and Social Interactions Using Abductive Analysis. ASONAM 2018: 413-420 - [c1]Vanessa Cedeno-Mieles
Pipelines and their Compositions for Modeling and Analysis of controlled Online Networked Social Science Experiments. WSC 2018: 774-785 - 2017
- [j3]Alice R. Wattam, James J. Davis, Rida Assaf, Sébastien Boisvert, Thomas S. Brettin, Christopher Bun, Neal Conrad, Emily M. Dietrich, Terry Disz, Joseph L. Gabbard
Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center. Nucleic Acids Res. 45(Database-Issue): D535-D542 (2017) - 2015
- [j2]Andrew S. Warren
RNA-Rocket: an RNA-Seq analysis resource for infectious disease research. Bioinform. 31(9): 1496-1498 (2015) - 2014
- [j1]Alice R. Wattam, David Abraham, Oral Dalay, Terry Disz, Timothy Driscoll
PATRIC, the bacterial bioinformatics database and analysis resource. Nucleic Acids Res. 42(Database-Issue): 581-591 (2014)
Coauthor Index
aka: Madhav Vinayak Marathe
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