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Volkhard Helms
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- affiliation: Saarland University, Saarbrücken, Germany
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2020 – today
- 2022
- [j33]Andreas Denger
, Volkhard Helms
Optimized Data Set and Feature Construction for Substrate Prediction of Membrane Transporters. J. Chem. Inf. Model. 62(23): 6242-6257 (2022) - 2021
- [j32]Markus Hollander, Trang Do, Thorsten Will, Volkhard Helms:
Detecting Rewiring Events in Protein-Protein Interaction Networks Based on Transcriptomic Data. Frontiers Bioinform. 1 (2021) - [j31]Maryam Nazarieh
Identification of Biomarkers Controlling Cell Fate In Blood Cell Development. Frontiers Bioinform. 1 (2021) - [j30]Markus Hollander
ProPores2: Web Service and Stand-Alone Tool for Identifying, Manipulating, and Visualizing Pores in Protein Structures. J. Chem. Inf. Model. 61(4): 1555-1559 (2021) - [j29]Pratiti Bhadra
How does Sec63 affect the conformation of Sec61 in yeast? PLoS Comput. Biol. 17(3) (2021) - 2020
- [j28]Maryam Nazarieh
TFmiR2: constructing and analyzing disease-, tissue- and process-specific transcription factor and microRNA co-regulatory networks. Bioinform. 36(7): 2300-2302 (2020) - [i1]Maryam Nazarieh, Volkhard Helms, Marc P. Hoeppner, Andre Franke:
Identification of Biomarkers Controlling Cell Fate In Blood Cell Development. CoRR abs/2009.08296 (2020)
2010 – 2019
- 2019
- [j27]Thorsten Will
Differential analysis of combinatorial protein complexes with CompleXChange. BMC Bioinform. 20(1): 300:1-300:14 (2019) - [j26]Maryam Nazarieh
Topology Consistency of Disease-specific Differential Co-regulatory Networks. BMC Bioinform. 20(1): 550:1-550:10 (2019) - 2018
- [j25]Markus Hollander, Mohamed Hamed, Volkhard Helms
MutaNET: a tool for automated analysis of genomic mutations in gene regulatory networks. Bioinform. 34(5): 864-866 (2018) - 2017
- [j24]Thorsten Will
Rewiring of the inferred protein interactome during blood development studied with the tool PPICompare. BMC Syst. Biol. 11(1): 44:1-44:19 (2017) - [j23]Sepideh Sadegh, Maryam Nazarieh
Randomization Strategies Affect Motif Significance Analysis in TF-miRNA-Gene Regulatory Networks. J. Integr. Bioinform. 14(2) (2017) - 2016
- [j22]Thorsten Will
PPIXpress: construction of condition-specific protein interaction networks based on transcript expression. Bioinform. 32(4): 571-578 (2016) - [j21]Maryam Nazarieh
Identification of key player genes in gene regulatory networks. BMC Syst. Biol. 10: 88 (2016) - [j20]Kerstin Reuter, Alexander Biehl
PreTIS: A Tool to Predict Non-canonical 5' UTR Translational Initiation Sites in Human and Mouse. PLoS Comput. Biol. 12(10) (2016) - 2015
- [j19]Jennifer Degac, Uwe Winter, Volkhard Helms
Graph-Based Clustering of Predicted Ligand-Binding Pockets on Protein Surfaces. J. Chem. Inf. Model. 55(9): 1944-1952 (2015) - [j18]Mohamed Hamed, Christian Spaniol, Maryam Nazarieh
TFmiR: a web server for constructing and analyzing disease-specific transcription factor and miRNA co-regulatory networks. Nucleic Acids Res. 43(Webserver-Issue): W283-W288 (2015) - 2014
- [j17]Thorsten Will
Identifying transcription factor complexes and their roles. Bioinform. 30(17): 415-421 (2014) - [j16]Junfang Chen, Pavlo Lutsik
AKSmooth: Enhancing low-coverage bisulfite sequencing data via kernel-based smoothing. J. Bioinform. Comput. Biol. 12(6) (2014) - 2013
- [j15]Ahmad Barghash, Volkhard Helms
Transferring functional annotations of membrane transporters on the basis of sequence similarity and sequence motifs. BMC Bioinform. 14: 343 (2013) - [j14]Nadine S. Schaadt
Rule-based regulatory and metabolic model for Quorum sensing in P. aeruginosa. BMC Syst. Biol. 7: 81 (2013) - [j13]Thorsten Will
Batch tautomer generation with MolTPC. J. Comput. Chem. 34(28): 2485-2492 (2013) - 2011
- [j12]Sikander Hayat
Statistical analysis and exposure status classification of transmembrane beta barrel residues. Comput. Biol. Chem. 35(2): 96-107 (2011) - [j11]Sikander Hayat
Prediction of the Exposure Status of transmembrane beta Barrel residues from protein Sequence. J. Bioinform. Comput. Biol. 9(1): 43-65 (2011) - 2010
- [j10]Ling Wang, Boris Stumm, Volkhard Helms
Graph-theoretical identification of dissociation pathways on free energy landscapes of biomolecular interaction. J. Comput. Chem. 31(4): 847-854 (2010) - [j9]Nadine S. Schaadt
Classifying Substrate Specificities of Membrane Transporters from Arabidopsis thaliana. J. Chem. Inf. Model. 50(10): 1899-1905 (2010)
2000 – 2009
- 2009
- [j8]Susanne Eyrisch, Volkhard Helms
What induces pocket openings on protein surface patches involved in protein-protein interactions? J. Comput. Aided Mol. Des. 23(2): 73-86 (2009) - 2008
- [j7]Yungki Park, Volkhard Helms
Prediction of the translocon-mediated membrane insertion free energies of protein sequences. Bioinform. 24(10): 1271-1277 (2008) - [j6]Yungki Park, Volkhard Helms
MINS2: Revisiting the molecular code for transmembrane-helix recognition by the Sec61 translocon. Bioinform. 24(16): 1819-1820 (2008) - [c2]Susanne Eyrisch, Volkhard Helms:
Designing Binding Pockets on Protein Surfaces using the A* Algorithm. German Conference on Bioinformatics 2008: 64-74 - 2007
- [j5]Yungki Park, Volkhard Helms
On the derivation of propensity scales for predicting exposed transmembrane residues of helical membrane proteins. Bioinform. 23(6): 701-708 (2007) - [j4]Yungki Park, Sikander Hayat
Prediction of the burial status of transmembrane residues of helical membrane proteins. BMC Bioinform. 8 (2007) - [j3]Peter Walter, Sam Ansari, Volkhard Helms:
The ABC (Analysing Biomolecular Contacts)-database. J. Integr. Bioinform. 4(1) (2007) - [c1]Kerstin Kunz, Volkhard Helms:
QVADIS - a Package to Compute Proton Transfer Pathways in Proteins. German Conference on Bioinformatics 2007: 111-122 - 2006
- [j2]Elena Herzog, Tomaso Frigato, Volkhard Helms
Energy barriers of proton transfer reactions between amino acid side chain analogs and water from ab initio calculations. J. Comput. Chem. 27(13): 1534-1547 (2006)
1990 – 1999
- 1999
- [p1]Volkhard Helms, James Andrew McCammon:
Conformational Transitions of Proteins from Atomistic Simulations. Computational Molecular Dynamics 1999: 66-77 - 1997
- [j1]Volkhard Helms, Rebecca C. Wade:
Free energies of hydration from thermodynamic integration: Comparison of molecular mechanics force fields and evaluation of calculation accuracy. J. Comput. Chem. 18(4): 449-462 (1997)
Coauthor Index
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