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Federico Zambelli
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2020 – today
- 2023
- [j18]Claudio Lo Giudice
, Federico Zambelli
UTRdb 2.0: a comprehensive, expert curated catalog of eukaryotic mRNAs untranslated regions. Nucleic Acids Res. 51(D1): 337-344 (2023) - 2022
- [j17]Enis Afgan, Anton Nekrutenko, Björn A. Grüning, Daniel J. Blankenberg, Jeremy Goecks, Michael C. Schatz, Alexander E. Ostrovsky, Alexandru Mahmoud, Andrew J. Lonie, Anna Syme, Anne Fouilloux, Anthony Bretaudeau, Anup Kumar, Arthur C. Eschenlauer, Assunta D. Desanto, Aysam Guerler, Beatriz Serrano-Solano, Bérénice Batut, Bradley W. Langhorst, Bridget Carr, Bryan A. Raubenolt, Cameron J. Hyde, Catherine J. Bromhead, Christopher B. Barnett, Coline Royaux, Cristóbal Gallardo, Daniel J. Fornika, Dannon Baker, Dave Bouvier, Dave Clements, David A. de Lima Morais, David Lopez Tabernero, Delphine Larivière, Engy Nasr, Federico Zambelli, Florian Heyl, Fotis E. Psomopoulos, Frederik Coppens, Gareth R. Price, Gianmauro Cuccuru, Gildas Le Corguillé, Gregory Von Kuster, Gulsum Gudukbay, Helena Rasche, Hans-Rudolf Hotz, Ignacio Eguinoa, Igor V. Makunin, Isuru Ranawaka, James Taylor, Jayadev Joshi, Jennifer Hillman-Jackson, John Chilton, Kaivan Kamali, Keith Suderman, Krzysztof Poterlowicz, Yvan Le Bras, Lucille Lopez-Delisle, Luke Sargent, Madeline E. Bassetti, Marco Antonio Tangaro, Marius van den Beek, Martin Cech, Matthias Bernt, Matthias Fahrner, Mehmet Tekman, Melanie Christine Föll, Michael R. Crusoe, Miguel Roncoroni, Natalie Kucher, Nate Coraor, Nicholas Stoler, Nick Rhodes, Nicola Soranzo, Niko Pinter, Nuwan Goonasekera, Pablo A. Moreno, Pavankumar Videm, Petera Melanie, Pietro Mandreoli, Pratik D. Jagtap, Qiang Gu, Ralf J. M. Weber, Ross Lazarus, Ruben H. P. Vorderman, Saskia D. Hiltemann, Sergey Golitsynskiy, Shilpa Garg, Simon A. Bray, Simon L. Gladman, Simone Leo, Subina P. Mehta, Timothy J. Griffin, Vahid Jalili, Yves Vandenbrouck, Victor Wen, Vijay K. Nagampalli, Wendi A. Bacon, Willem L. De Koning, Wolfgang Maier, Peter J. Briggs:
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update. Nucleic Acids Res. 50(W1): 345-351 (2022) - [c3]Marco Antonio Tangaro
The Laniakea Dashboard and Storage Encryption Components: A Foundation for Developing On-Demand Cloud Services for Life Science. ICWE Workshops 2022: 179-191 - 2021
- [j16]Matteo Chiara
Next generation sequencing of SARS-CoV-2 genomes: challenges, applications and opportunities. Briefings Bioinform. 22(2): 616-630 (2021) - [j15]Matteo Chiara
CorGAT: a tool for the functional annotation of SARS-CoV-2 genomes. Bioinform. 36(22-23): 5522-5523 (2021) - [j14]Matteo Chiara
VINYL: Variant prIoritizatioN bY survivaL analysis. Bioinform. 36(24): 5590-5599 (2021) - [j13]Marco Antonio Tangaro
Laniakea@ReCaS: exploring the potential of customisable Galaxy on-demand instances as a cloud-based service. BMC Bioinform. 22-S(15): 544 (2021) - 2020
- [j12]Matteo Chiara
Critical assessment of bioinformatics methods for the characterization of pathological repeat expansions with single-molecule sequencing data. Briefings Bioinform. 21(6): 1971-1986 (2020) - [j11]Tiziana Castrignanò, Silvia Gioiosa
ELIXIR-IT HPC@CINECA: high performance computing resources for the bioinformatics community. BMC Bioinform. 21-S(10): 352 (2020)
2010 – 2019
- 2018
- [j10]Davide Salomoni
INDIGO-DataCloud: a Platform to Facilitate Seamless Access to E-Infrastructures. J. Grid Comput. 16(3): 381-408 (2018) - 2016
- [j9]Jon C. Ison
Tools and data services registry: a community effort to document bioinformatics resources. Nucleic Acids Res. 44(Database-Issue): 38-47 (2016) - 2013
- [j8]Federico Zambelli
Motif discovery and transcription factor binding sites before and after the next-generation sequencing era. Briefings Bioinform. 14(2): 225-237 (2013) - [j7]Matteo Giulietti
SpliceAid-F: a database of human splicing factors and their RNA-binding sites. Nucleic Acids Res. 41(Database-Issue): 125-131 (2013) - [j6]Federico Zambelli
PscanChIP: finding over-represented transcription factor-binding site motifs and their correlations in sequences from ChIP-Seq experiments. Nucleic Acids Res. 41(Webserver-Issue): 535-543 (2013) - 2012
- [j5]Federico Zambelli
Cscan: finding common regulators of a set of genes by using a collection of genome-wide ChIP-seq datasets. Nucleic Acids Res. 40(Web-Server-Issue): 510-515 (2012) - 2011
- [j4]Pier Luigi Martelli
ASPicDB: a database of annotated transcript and protein variants generated by alternative splicing. Nucleic Acids Res. 39(Database-Issue): 80-85 (2011) - [c2]Federico Zambelli
A Faster Algorithm for Motif Finding in Sequences from ChIP-Seq Data. CIBB 2011: 201-212
2000 – 2009
- 2009
- [j3]Federico Zambelli
Pscan: finding over-represented transcription factor binding site motifs in sequences from co-regulated or co-expressed genes. Nucleic Acids Res. 37(Web-Server-Issue): 247-252 (2009) - 2007
- [j2]Giulio Pavesi
WeederH: an algorithm for finding conserved regulatory motifs and regions in homologous sequences. BMC Bioinform. 8 (2007) - [c1]Giulio Pavesi
Prediction of over Represented Transcription Factor Binding Sites in Co-regulated Genes Using Whole Genome Matching Statistics. WILF 2007: 651-658 - 2006
- [j1]Giulio Pavesi
MoD Tools: regulatory motif discovery in nucleotide sequences from co-regulated or homologous genes. Nucleic Acids Res. 34(Web-Server-Issue): 566-570 (2006)
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