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Matthew Scotch
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2020 – today
- 2024
- [j18]Andreas Züfle
, Flora D. Salim
Leveraging Simulation Data to Understand Bias in Predictive Models of Infectious Disease Spread. ACM Trans. Spatial Algorithms Syst. 10(2): 17 (2024) - 2023
- [j17]Saif S. Khairat
Foundational domains and competencies for baccalaureate health informatics education. J. Am. Medical Informatics Assoc. 30(10): 1599-1607 (2023) - 2022
- [c13]Christina Eldredge, Saif Khairat, Sue S. Feldman, Matthew Scotch:
Towards Standards for Undergraduate Health Informatics Education. AMIA 2022 - 2021
- [c12]Rafaela S. Fontenele, Simona Kraberger, James Hadfield, Erin M. Driver, Devin Bowes, LaRinda A. Holland, Temitope O. Faleye, Sangeet Adhikari, Rahul Kumar, Rosa Inchausti, Wydale K. Holmes, Stephanie Deitrick, Philip Brown, Darrell Duty, Aruni Bhatnagar, Ray A. Yeager, Rochelle H. Holm, Kevin Dixon, Tim Constantine, Melissa A. Wilson, Efrem S. Lim, Xiaofang Jiang, Rolf U. Halden, Matthew Scotch, Arvind Varsani:
High-throughput sequencing of SARS-CoV-2 in wastewater provides insights into circulating variants. AMIA 2021 - 2020
- [j16]Arjun Magge, Davy Weissenbacher, Karen O'Connor, Tasnia Tahsin, Graciela Gonzalez-Hernandez
GeoBoost2: a natural languageprocessing pipeline for GenBank metadata enrichment for virus phylogeography. Bioinform. 36(20): 5120-5121 (2020)
2010 – 2019
- 2019
- [c11]Arjun Magge, Davy Weissenbacher, Abeed Sarker, Matthew Scotch, Graciela Gonzalez-Hernandez:
Bi-directional Recurrent Neural Network Models for Geographic Location Extraction in Biomedical Literature. PSB 2019: 100-111 - [c10]Davy Weissenbacher, Arjun Magge, Karen O'Connor, Matthew Scotch, Graciela Gonzalez-Hernandez:
SemEval-2019 Task 12: Toponym Resolution in Scientific Papers. SemEval@NAACL-HLT 2019: 907-916 - 2018
- [j15]Tasnia Tahsin, Davy Weissenbacher, Karen O'Connor, Arjun Magge, Matthew Scotch
GeoBoost: accelerating research involving the geospatial metadata of virus GenBank records. Bioinform. 34(9): 1606-1608 (2018) - [j14]Arjun Magge, Davy Weissenbacher, Abeed Sarker
Deep neural networks and distant supervision for geographic location mention extraction. Bioinform. 34(13): i565-i573 (2018) - [c9]Arjun Magge, Matthew Scotch, Graciela Gonzalez-Hernandez:
Clinical NER and Relation Extraction using Bi-Char-LSTMs and Random Forest Classifiers. Medication and Adverse Drug Event Detection 2018: 25-30 - 2017
- [j13]Tasnia Tahsin, Davy Weissenbacher, Demetrius Jones-Shargani, Daniel Magee, Matteo Vaiente, Graciela Gonzalez
Named entity linking of geospatial and host metadata in GenBank for advancing biomedical research. Database J. Biol. Databases Curation 2017: bax093 (2017) - [j12]Daniel Magee
Bayesian phylogeography of influenza A/H3N2 for the 2014-15 season in the United States using three frameworks of ancestral state reconstruction. PLoS Comput. Biol. 13(2) (2017) - [c8]Arjun Magge, Matthew Scotch, Graciela Gonzalez:
CSaRUS-CNN at AMIA-2017 Tasks 1, 2: Under Sampled CNN for Text Classification. SMM4H@AMIA 2017: 76-78 - 2016
- [j11]Tasnia Tahsin, Davy Weissenbacher, Robert Rivera, Rachel Beard, Mari Firago, Garrick L. Wallstrom, Matthew Scotch
A high-precision rule-based extraction system for expanding geospatial metadata in GenBank records. J. Am. Medical Informatics Assoc. 23(5): 934-941 (2016) - [c7]Michael J. Paul, Abeed Sarker, John S. Brownstein, Azadeh Nikfarjam, Matthew Scotch, Karen L. Smith, Graciela Gonzalez-Hernandez:
Session Introduction. PSB 2016: 468-479 - 2015
- [j10]Davy Weissenbacher, Tasnia Tahsin, Rachel Beard, Mari Figaro, Robert Rivera, Matthew Scotch
Knowledge-driven geospatial location resolution for phylogeographic models of virus migration. Bioinform. 31(12): 348-356 (2015) - [c6]Daniel Magee, Rachel Beard, Matthew Scotch:
Analyses of Merging Clinical and Viral Genetic Data for Influenza Surveillance. AMIA 2015 - 2014
- [j9]Michael J. Kane, Natalie Price, Matthew Scotch
Comparison of ARIMA and Random Forest time series models for prediction of avian influenza H5N1 outbreaks. BMC Bioinform. 15: 276 (2014) - [c5]Tasnia Tahsin, Robert Rivera, Rachel Beard, Rob Lauder, Davy Weissenbacher, Matthew Scotch, Garrick L. Wallstrom, Graciela Gonzalez:
Natural Language Processing Methods for Enhancing Geographic Metadata for Phylogeography of Zoonotic Viruses. BioNLP@ACL 2014: 1-9 - 2013
- [j8]R. Braithwaite, Matthew Scotch
Using value of information to guide evaluation of decision supports for differential diagnosis: is it time for a new look? BMC Medical Informatics Decis. Mak. 13: 105 (2013) - [c4]Susana B. Martins, Samson W. Tu, Richard Martinello, Michael Rubin, Philip Foulis, Stephen Luther, Tyler Forbush, Matthew Scotch, Brad Doebbelling, Mary K. Goldstein:
Creating a MRSA Ontology to Support Categorization of MRSA Infections. AMIA 2013 - 2011
- [j7]Vijay Garla, Vincent Lo Re III, Zachariah Dorey-Stein, Farah Kidwai, Matthew Scotch
The Yale cTAKES extensions for document classification: architecture and application. J. Am. Medical Informatics Assoc. 18(5): 614-620 (2011) - [j6]Matthew Scotch
Enhancing phylogeography by improving geographical information from GenBank. J. Biomed. Informatics 44(Supplement-1): S44-S47 (2011) - 2010
- [j5]Matthew Scotch
Brief review: Use of statistical analysis in the biomedical informatics literature. J. Am. Medical Informatics Assoc. 17(1): 3-5 (2010)
2000 – 2009
- 2008
- [j4]Matthew Scotch
Case Report: Development of Grid-like Applications for Public Health Using Web 2.0 Mashup Techniques. J. Am. Medical Informatics Assoc. 15(6): 783-786 (2008) - [j3]Kei-Hoi Cheung, Kevin Y. Yip
HCLS 2.0/3.0: Health care and life sciences data mashup using Web 2.0/3.0. J. Biomed. Informatics 41(5): 694-705 (2008) - [j2]Matthew Scotch
Evaluation of SOVAT: An OLAP-GIS decision support system for community health assessment data analysis. BMC Medical Informatics Decis. Mak. 8: 22 (2008) - 2006
- [j1]Matthew Scotch
Development of SOVAT: A numerical-spatial decision support system for community health assessment research. Int. J. Medical Informatics 75(10-11): 771-784 (2006) - 2005
- [c3]Matthew Scotch, Bambang Parmanto:
SOVAT: Spatial OLAP Visualization and Analysis Tool. HICSS 2005 - 2002
- [c2]Matthew Scotch, George Hripcsak:
The Companion Project - A Wearable Computing Device for the Patient for Reducing Medical Errors and Improving Patient Care. AMIA 2002 - [c1]Peter D. Stetson, Stephen B. Johnson, Matthew Scotch, George Hripcsak:
The sublanguage of cross-coverage. AMIA 2002
Coauthor Index
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