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Neuroinformatics, Volume 16

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Volume 16, Number 1, January 2018

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Erik De Schutter:
Deep Learning and Computational Neuroscience. 1-2
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  - journals/ni/KanariDSLSHM18
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Lida Kanari, Pawel Dlotko, Martina Scolamiero, Ran Levi, Julian C. Shillcock, Kathryn Hess, Henry Markram:
A Topological Representation of Branching Neuronal Morphologies. 3-13
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Vito Paolo Pastore, Aleksandar Godjoski, Sergio Martinoia, Paolo Massobrio:
SpiCoDyn: A Toolbox for the Analysis of Neuronal Network Dynamics and Connectivity from Multi-Site Spike Signal Recordings. 15-30
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Guan-Wei He, Ting-Yuan Wang, Ann-Shyn Chiang, Yu-Tai Ching:
Soma Detection in 3D Images of Neurons using Machine Learning Technique. 31-41
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Heath R. Pardoe, Ruben Kuzniecky:
NAPR: a Cloud-Based Framework for Neuroanatomical Age Prediction. 43-49
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Ziga Lesjak, Alfiia Galimzianova, Ales Koren, Matej Lukin, Franjo Pernus, Bostjan Likar, Ziga Spiclin:
A Novel Public MR Image Dataset of Multiple Sclerosis Patients With Lesion Segmentations Based on Multi-rater Consensus. 51-63
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Sascha E. A. Muenzing, Martin Strauch, James W. Truman, Katja Bühler, Andreas S. Thum, Dorit Merhof:
larvalign: Aligning Gene Expression Patterns from the Larval Brain of Drosophila melanogaster. 65-80
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Christof Seiler, Tamar Green, David Hong, Lindsay Chromik, Lynne Huffman, Susan P. Holmes, Allan L. Reiss:
Multi-Table Differential Correlation Analysis of Neuroanatomical and Cognitive Interactions in Turner Syndrome. 81-93
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  - journals/ni/MarkiewiczEENBS18
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Pawel J. Markiewicz, Matthias J. Ehrhardt, Kjell Erlandsson, Philip J. Noonan, Anna Barnes, Jonathan M. Schott, David Atkinson, Simon R. Arridge, Brian F. Hutton, Sébastien Ourselin:
NiftyPET: a High-throughput Software Platform for High Quantitative Accuracy and Precision PET Imaging and Analysis. 95-115
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Jessica Schrouff, João M. Monteiro, Liana Catarina Lima Portugal, Maria J. Rosa, Christophe Phillips, Janaina Mourão Miranda:
Embedding Anatomical or Functional Knowledge in Whole-Brain Multiple Kernel Learning Models. 117-143
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Matthew J. P. Barrett, Kim David Ferrari, Jillian L. Stobart, Martin Holub, Bruno Weber:
CHIPS: an Extensible Toolbox for Cellular and Hemodynamic Two-Photon Image Analysis. 145-147

Volume 16, Number 2, April 2018

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David N. Kennedy:
Neuroimaging Neuroinformatics: Sample Size and Other Evolutionary Topics. 149-150
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Gordon M. Shepherd:
Wilfrid Rall. 151-152
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Donghao Zhang, Siqi Liu, Yang Song, Dagan Feng, Hanchuan Peng, Weidong Cai:
Automated 3D Soma Segmentation with Morphological Surface Evolution for Neuron Reconstruction. 153-166
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Marco Ganzetti, Quanying Liu, Dante Mantini:
A Spatial Registration Toolbox for Structural MR Imaging of the Aging Brain. 167-179
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Bart Ferguson, Natalia Petridou, Alessio Fracasso, Martijn P. van den Heuvel, Rachel M. Brouwer, Hilleke E. Hulshoff Pol, René S. Kahn, René C. W. Mandl:
Detailed T1-Weighted Profiles from the Human Cortex Measured in Vivo at 3 Tesla MRI. 181-196
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Runa Bhaumik, Ashish Pradhan, Soptik Das, Dulal K. Bhaumik:
Predicting Autism Spectrum Disorder Using Domain-Adaptive Cross-Site Evaluation. 197-205
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Ting-Yuan Wang, Nan-Yow Chen, Guan-Wei He, Guo-Tzau Wang, Chi-Tin Shih, Ann-Shyn Chiang:
Kaleido: Visualizing Big Brain Data with Automatic Color Assignment for Single-Neuron Images. 207-215
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Bengt Ljungquist, Per Petersson, Anders J. Johansson, Jens Schouenborg, Martin Garwicz:
A Bit-Encoding Based New Data Structure for Time and Memory Efficient Handling of Spike Times in an Electrophysiological Setup. 217-229
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Meysam Hashemi, Axel Hutt, Laure Buhry, Jamie W. Sleigh:
Optimal Model Parameter Estimation from EEG Power Spectrum Features Observed during General Anesthesia. 231-251
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James Deraeve, William H. Alexander:
Fast, Accurate, and Stable Feature Selection Using Neural Networks. 253-268
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Yifeng Ling, Eric Jouvent, Louis Cousyn, Hugues Chabriat, François De Guio:
Validation and Optimization of BIANCA for the Segmentation of Extensive White Matter Hyperintensities. 269-281

Volume 16, Numbers 3-4, October 2018

High Performance Computing in Bio-medical Informatics

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Luping Zhou, Islem Rekik, Chenggang Yan, Guorong Wu:
Special Issue on High Performance Computing in Bio-medical Informatics. 283
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Xiaoqian Wang, Xiantong Zhen, Quanzheng Li, Dinggang Shen, Heng Huang:
Cognitive Assessment Prediction in Alzheimer's Disease by Multi-Layer Multi-Target Regression. 285-294
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Manhua Liu, Danni Cheng, Kundong Wang, Yaping Wang:
Multi-Modality Cascaded Convolutional Neural Networks for Alzheimer's Disease Diagnosis. 295-308
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Shijie Zhao, Junwei Han, Xi Jiang, Heng Huang, Huan Liu, Jinglei Lv, Lei Guo, Tianming Liu:
Decoding Auditory Saliency from Brain Activity Patterns during Free Listening to Naturalistic Audio Excerpts. 309-324
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Zhongyi Han, Benzheng Wei, Stephanie Leung, Ilanit Ben Nachum, David T. Laidley, Shuo Li:
Automated Pathogenesis-Based Diagnosis of Lumbar Neural Foraminal Stenosis via Deep Multiscale Multitask Learning. 325-337
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Zhongyu Li, Erik Butler, Kang Li, Aidong Lu, Shuiwang Ji, Shaoting Zhang:
Large-scale Exploration of Neuronal Morphologies Using Deep Learning and Augmented Reality. 339-349
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Xiaofeng Zhu, Weihong Zhang, Yong Fan:
A Robust Reduced Rank Graph Regression Method for Neuroimaging Genetic Analysis. 351-361
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Yatong Jiang, Bingtao Liu, Linghui Yu, Chenggang Yan, Hujun Bian:
Predict MiRNA-Disease Association with Collaborative Filtering. 363-372
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Biyao Shao, Bingtao Liu, Chenggang Yan:
SACMDA: MiRNA-Disease Association Prediction with Short Acyclic Connections in Heterogeneous Graph. 373-382
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Yuan Xue, Tao Xu, Han Zhang, L. Rodney Long, Xiaolei Huang:
SegAN: Adversarial Network with Multi-scale L 1 Loss for Medical Image Segmentation. 383-392
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Bob Zigon, Huang Li, Xiaohui Yao, Shiaofen Fang, Mohammad Al Hasan, Jingwen Yan, Jason H. Moore, Andrew J. Saykin, Li Shen:
GPU Accelerated Browser for Neuroimaging Genomics. 393-402
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Peipeng Liang, Yachao Xu, Fei Lan, Daqing Ma, Kuncheng Li:
Decreased Cerebral Blood Flow in Mesial Thalamus and Precuneus/PCC during Midazolam Induced Sedation Assessed with ASL. 403-410
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Yan Wang, Guangkai Ma, Xi Wu, Jiliu Zhou:
Patch-Based Label Fusion with Structured Discriminant Embedding for Hippocampus Segmentation. 411-423
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Zheng Xu, Sheng Wang, Yeqing Li, Feiyun Zhu, Junzhou Huang:
PRIM: An Efficient Preconditioning Iterative Reweighted Least Squares Method for Parallel Brain MRI Reconstruction. 425-430
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Yangming Ou, Lilla Zöllei, Xiao Da, Kallirroi Retzepi, Shawn N. Murphy, Elizabeth R. Gerstner, Bruce R. Rosen, Patricia Ellen Grant, Jayashree Kalpathy-Cramer, Randy L. Gollub:
Field of View Normalization in Multi-Site Brain MRI. 431-444
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Shancheng Fang, Hongtao Xie, Zhineng Chen, Yizhi Liu, Yan Li:
Uyghur Text Matching in Graphic Images for Biomedical Semantic Analysis. 445-455
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Wu Liu, Cheng Zhang, Huadong Ma, Shuangqun Li:
Learning Efficient Spatial-Temporal Gait Features with Deep Learning for Human Identification. 457-471
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Lei Cai, Bian Wu, Shuiwang Ji:
Neuronal Activities in the Mouse Visual Cortex Predict Patterns of Sensory Stimuli. 473-488

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