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Computational Biology and Chemistry, Volume 29
Volume 29, Number 1, February 2005
- Izabela Makalowska
, Chiao-Feng Lin
Overlapping genes in vertebrate genomes. 1-12 - Akintunde A. Akindahunsi, Antonella Bandiera, Giorgio Manzini:
Vertebrate 2xRBD hnRNP proteins: a comparative analysis of genome, mRNA and protein sequences. 13-23 - K. Saraboji, M. Michael Gromiha, Mon Nanjappa Ponnuswamy:
Relative importance of secondary structure and solvent accessibility to the stability of protein mutants.: A case study with amino acid properties and energetics on T4 and human lysozymes. 25-35 - Yu Wang, Igor V. Tetko
Gene selection from microarray data for cancer classification - a machine learning approach. 37-46 - Yinglei Lai, Hongyu Zhao
A statistical method to detect chromosomal regions with DNA copy number alterations using SNP-array-based CGH data. 47-54 - Suzanne W. Sirois, George E. Hatzakis, Dongqing Wei, Qishi Du, Kuo-Chen Chou:
Assessment of chemical libraries for their druggability. 55-67 - Jacek Blazewicz
Multistage isothermic sequencing by hybridization. 69-77 - Ruizhen Xu, Yi Xiao:
A common sequence-associated physicochemical feature for proteins of beta-trefoil family. 79-82
Volume 29, Number 2, April 2005
- Arturas Ziemys
Heme peroxidase clothing and inhibition with polyphenolic substances revealed by molecular modeling. 83-90 - Jinfeng Xu
Survival analysis of microarray expression data by transformation models. 91-94 - Minglei Wang, Hui Yao, Wenbo Xu:
Prediction by support vector machines and analysis by Z-score of poly-l-proline type II conformation based on local sequence. 95-100 - Steve J. Viljoen, Mark A. Griep, Michael Nelson, Hendrik J. Viljoen:
A macroscopic kinetic model for DNA polymerase elongation and high-fidelity nucleotide selection. 101-110 - Akito Taneda:
Cofolga: a genetic algorithm for finding the common folding of two RNAs. 111-119 - Tae Hoon Yang, Elmar Heinzle, Christoph Wittmann
Theoretical aspects of 13C metabolic flux analysis with sole quantification of carbon dioxide labeling. 121-133 - M. Michael Gromiha, Shandar Ahmad
Application of residue distribution along the sequence for discriminating outer membrane proteins. 135-142 - W. Michael Brown, Jean-Loup Faulon
A deterministic algorithm for constrained enumeration of transmembrane protein folds. 143-150 - S. Tiveci, Ata Akin
Modelling of calcium dynamics in brain energy metabolism and Alzheimer's disease. 151-162 - William Knight, Walter Hill, J. Stephen Lodmell:
Ribosome Builder: A software project to simulate the ribosome. 163-174
- Min Zhang, Weiwu Fang, Junhua Zhang, Zhongxian Chi:
MSAID: multiple sequence alignment based on a measure of information discrepancy. 175-181
Volume 29, Number 3, June 2005
- Giuseppe Musumarra
Genome-based identification of diagnostic molecular markers for human lung carcinomas by PLS-DA. 183-195 - Jan Weyer-Menkhoff, Claudine Devauchelle, Alexander Grossmann, Stefan Grünewald:
Integer linear programming as a tool for constructing trees from quartet data. 196-203 - Xiaohong Huang, Wei Pan, Xinqiang Han, Yingjie Chen
Borrowing information from relevant microarray studies for sample classification using weighted partial least squares. 204-211 - YeeLeng Yap, Xuewu Zhang, Anton Andonov, RunTao He:
Structural analysis of inhibition mechanisms of Aurintricarboxylic Acid on SARS-CoV polymerase and other proteins. 212-219 - Zhi-ning Wen, Ke-long Wang, Meng-long Li, Fu-sheng Nie, Yi Yang:
Analyzing functional similarity of protein sequences with discrete wavelet transform. 220-228 - Andrew A. Laskin, Nikolay A. Kudryashov
Latent periodicity of serine-threonine and tyrosine protein kinases and other protein families. 229-243 - Jeong-Hyeon Choi, Hwan-Gue Cho, Sun Kim:
GAME: A simple and efficient whole genome alignment method using maximal exact match filtering. 244-253
- Yuan Zhang, Nan Zheng, Pei Hao
A molecular docking model of SARS-CoV S1 protein in complex with its receptor, human ACE2. 254-257
- Yinglei Lai, Hongyu Zhao:
Erratum to "A statistical method to detect chromosomal regions with DNA copy number alterations using SNP-array-based CGH data": [Comput. Biol. Chem. 29(2005) 47-54]. 258
Volume 29, Number 4, August 2005
- William R. Taylor:
Modelling molecular stability in the RNA world. 259-272 - Zhihua Du, Feng Lin, Usman W. Roshan:
Reconstruction of large phylogenetic trees: A parallel approach. 273-280 - Yu-Ying Zhao, Ling-Yun Wu, Ji-Hong Zhang, Rui-Sheng Wang
Haplotype assembly from aligned weighted SNP fragments. 281-287 - Alexey V. Antonov, Igor V. Tetko
Exploiting scale-free information from expression data for cancer classification. 288-293 - Jeffrey J. Jones, S. Mariccor A. B. Batoy, Charles L. Wilkins
A comprehensive and comparative analysis for MALDI FTMS lipid and phospholipid profiles from biological samples. 294-302
Volume 29, Number 5, October 2005
- Raman Lall, Eberhard O. Voit:
Parameter estimation in modulated, unbranched reaction chains within biochemical systems. 309-318 - Alessandra Riva
Comments on selected fundamental aspects of microarray analysis. 319-336 - Jairo Rocha
A family of metrics for biopolymers based on counting independent sets. 337-344 - Ernesto Estrada
Folding degrees of azurins and pseudoazurins: Implications for structure and function. 345-353
- B. Samuel Lattimore, Stijn van Dongen, M. James C. Crabbe:
GeneMCL in microarray analysis. 354-359
- Xiao Li, Yi-Zheng Zhang:
Computational detection of microRNAs targeting transcription factor genes in Arabidopsis thaliana. 360-367 - Sharmila Anishetty, Mrudula Pulimi
Potential drug targets in Mycobacterium tuberculosis through metabolic pathway analysis. 368-378 - Masafumi Arai, Takafumi Fukushi, Masanobu Satake, Toshio Shimizu:
A proteome-wide analysis of domain architectures of prokaryotic single-spanning transmembrane proteins. 379-387 - Qing-Bin Gao, Zheng-Zhi Wang:
Using Nearest Feature Line and Tunable Nearest Neighbor methods for prediction of protein subcellular locations. 388-392
Volume 29, Number 6, December 2005
- Ryan T. Koehler, Nicolas Peyret:
Effects of DNA secondary structure on oligonucleotide probe binding efficiency. 393-397 - D. Yu. Mordvintsev, Ya. L. Polyak, Olga V. Levtsova, Ye. V. Tourleigh, I. E. Kasheverov, Konstantin V. Shaitan, Yu. N. Utkin, Victor I. Tsetlin:
A model for short alpha-neurotoxin bound to nicotinic acetylcholine receptor from Torpedo californica: Comparison with long-chain alpha-neurotoxins and alpha-conotoxins. 398-411
- Daijin Ko, Wanyan Xu, Brad Windle:
Gene function classification using NCI-60 cell line gene expression profiles. 412-419 - Diego Bonatto
The eukaryotic Pso2p/Snm1p family revisited: In Silico analyses of Pso2p A, B and Plasmodium groups. 420-433
- Tadashi Nemoto, Dmitri G. Fedorov, Masami Uebayasi, Kenji Kanazawa, Kazuo Kitaura, Yuto Komeiji
Ab initio fragment molecular orbital (FMO) method applied to analysis of the ligand-protein interaction in a pheromone-binding protein. 434-439 - Bobbie-Jo M. Webb-Robertson
SVM-BALSA: Remote homology detection based on Bayesian sequence alignment. 440-443
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