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XSEDE 2012: Chicago, IL, USA
- Craig Stewart:
Proceedings of the 1st Conference of the Extreme Science and Engineering Discovery Environment - Bridging from the eXtreme to the campus and beyond, XSEDE '12, Chicago, Illinois, USA, July 16-20, 2012. ACM 2012, ISBN 978-1-4503-1602-6
Technology track
- Christopher S. Simmons, Karl W. Schulz:
A distributed memory out-of-core method on HPC clusters and its application to quantum chemistry applications. 1:1-1:7 - Rajib Mukherjee
, Abhinav Thota, Hideki Fujioka
Running many molecular dynamics simulations on many supercomputers. 2:1-2:9 - Shawn M. Strande, Pietro Cicotti, Robert S. Sinkovits
Gordon: design, performance, and experiences deploying and supporting a data intensive supercomputer. 3:1-3:8 - Alan Humphrey, Qingyu Meng, Martin Berzins, Todd Harman:
Radiation modeling using the Uintah heterogeneous CPU/GPU runtime system. 4:1-4:8 - Tabitha K. Samuel, Stephen Taylor McNally, John Wynkoop:
An analysis of GPU utilization trends on the Keeneland initial delivery system. 5:1-5:6 - Amy F. Szczepanski, Jian Huang, Sean Ahern, Mark R. Fahey:
A tale of two systems: flexibility of usage of Kraken and Nautilus at the National Institute for Computational Sciences. 6:1-6:8 - Matthew A. Ezell, Gary L. Rogers, Gregory D. Peterson:
A framework for federated two-factor authentication enabling cost-effective secure access to distributed cyberinfrastructure. 7:1-7:8 - Ashay Rane, James C. Browne, Lars Koesterke:
A systematic process for efficient execution on Intel's heterogeneous computation nodes. 8:1-8:8 - Chris Jordan:
Evaluation of parallel and distributed file system technologies for XSEDE. 9:1 - Bilel Hadri, Haihang You, Shirley Moore:
Achieve better performance with PEAK on XSEDE resources. 10:1-10:8 - Richard Lee Moore, Adam Jundt, Leonard K. Carson, Kenneth Yoshimoto
Analyzing throughput and utilization on trestles. 11:1-11:7 - Josephine Palencia, Robert Budden, Kathy Benninger, Jorge Rodríguez
Using kerberized lustre over the WAN for high energy physics data. 12:1-12:7 - Paul Nowoczynski, Jason Sommerfield, Jared Yanovich, J. Ray Scott, Zhihui Zhang, Michael Levine:
The data supercell. 13:1-13:11
Science track
- Justin McKennon, Gary Forrester, Gaurav Khanna:
High accuracy gravitational waveforms from black hole binary inspirals using OpenCL. 14:1-14:8 - Ross C. Walker, Levi C. T. Pierce, Romelia Salomón-Ferrer:
Transforming molecular biology research through extreme acceleration of AMBER molecular dynamics simulations: sampling for the 99%. 15:1 - Fatemeh Khalili-Araghi, Brigitte Ziervogel, Benoît Roux, James C. Gumbart:
Membrane protein simulations under asymmetric ionic concentrations. 16:1 - Xiaoxu Guan, Klaus Bartschat, Barry I. Schneider
Benchmark calculations for multi-photon ionization of the hydrogen molecule and the hydrogen molecular ion by short-pulse intense laser radiation. 17:1-17:6 - Hanning Chen, Xiao Zhu
Electrostatic screening effects on a model system for molecular electronics. 18:1-18:2 - Hui Zhang, Huian Li, Michael J. Boyles, Robert Henschel, Eduardo Kazuo Kohara, Masatoshi Ando:
Exploiting HPC resources for the 3D-time series analysis of caries lesion activity. 19:1-19:8 - Luke P. Van Roekel, Peter E. Hamlington, Baylor Fox-Kemper
Multiscale simulations of Langmuir cells and submesoscale eddies using XSEDE resources. 20:1-20:8 - Channing Brown, Iftekhar Ahmed, Y. Dora Cai, Marshall Scott Poole, Andrew Pilny, Yannick Atouba Ada:
Comparing the performance of group detection algorithm in serial and parallel processing environments. 21:1-21:4 - Judith Gelernter, Gang Wu:
High performance mining of social media data. 22:1-22:3 - Shriram Jagannathan, Diego A. Donzis:
Massively parallel direct numerical simulations of forced compressible turbulence: a hybrid MPI/OpenMP approach. 23:1-23:8 - Grady Schofield, Yousef Saad
Quantum algorithms for predicting the properties of complex materials. 24:1-24:8 - Lev D. Gelb:
Monte Carlo strategies for first-principles simulations of elemental systems. 25:1-25:7 - Eric Jankowski:
Computational challenges in nanoparticle partition function calculation. 26:1-26:2 - Brian F. Jewett, Jay C. Alameda, Robert B. Wilhelmson, Ann M. Syrowski:
Ensemble modeling of storm interaction with XSEDE. 27:1 - Colin Morningstar, J. Bulava
Excited states in lattice QCD using the stochastic LapH method. 28:1-28:8 - Virginia Kuhn, Alan B. Craig, Ritu Arora:
Multiple concurrent queries on demand: large scale video analysis in a flash memory environment as a case for humanities supercomputing. 29:1-29:2 - Frank T. Willmore:
A toolkit for the analysis and visualization of free volume in materials. 30:1-30:6 - Margarete A. Jadamec, Magali I. Billen, Oliver Kreylos:
Three-dimensional simulations of geometrically complex subduction with large viscosity variations. 31:1-31:8 - Joseph R. Peterson, Jacqueline C. Beckvermit, Todd Harman, Martin Berzins, Charles A. Wight:
Multiscale modeling of high explosives for transportation accidents. 32:1-32:8 - Leopold Grinberg, Mingge Deng, Huan Lei, Joseph A. Insley, George Em Karniadakis:
Multiscale simulations of blood-flow: from a platelet to an artery. 33:1-33:7 - Brandon M. S. Erickson, Raminderjeet Singh, August E. Evrard
A high throughput workflow environment for cosmological simulations. 34:1-34:8 - Bradley Pirtle, Ross Kimes, Amy McGovern, Rodger A. Brown:
Using the XSEDE supercomputing and visualization resources to improve tornado prediction using data mining. 35:1-35:2 - Jacek Jakowski
Optimization of density functional tight-binding and classical reactive molecular dynamics for high-throughput simulations of carbon materials. 36:1-36:7 - Yuxing Peng, Chris Knight, Philip D. Blood, Lonnie D. Crosby
Extending parallel scalability of LAMMPS and multiscale reactive molecular simulations. 37:1-37:7
Software and software engineering track
- Scott Simmerman, Jingyuan Wang, James Osborne, Kimberly Shook, Jian Huang, William Godsoe
Exploring similarities among many species distributions. 38:1-38:9 - Mark A. Miller
The CIPRES science gateway: enabling high-impact science for phylogenetics researchers with limited resources. 39:1-39:8 - Katherine A. Lawrence, Nancy Wilkins-Diehr:
Roadmaps, not blueprints: paving the way to science gateway success. 40:1-40:8 - Doug James, Carlos Rosales, Dan Stanzione:
Offline parallel debugging: a case study report. 41:1-41:2 - Emre H. Brookes, Raminderjeet Singh, Marlon E. Pierce
Ultrascan solution modeler: integrated hydrodynamic parameter and small angle scattering computation and fitting tools. 42:1-42:8 - Dennis G. Castleberry, Steven R. Brandt, Frank Löffler
The Prickly Pear Archive: a portable hypermedia for scholarly publication. 43:1-43:8 - Hari Krishnan, Dennis G. Castleberry, Steven R. Brandt:
Mojave: a development environment for the Cactus computational framework. 44:1-44:8 - Robert Henschel, Matthias Lieber
Trinity RNA-Seq assembler performance optimization. 45:1-45:8 - Melissa Romanus
The anatomy of successful ECSS projects: lessons of supporting high-throughput high-performance ensembles on XSEDE. 46:1-46:9 - Craig A. Stewart, Richard Knepper
What is campus bridging and what is XSEDE doing about it? 47:1-47:8 - Jay Alameda
The Eclipse parallel tools platform: toward an integrated development environment for XSEDE resources. 48:1-48:8 - Mats Rynge, Scott Callaghan, Ewa Deelman, Gideon Juve, Gaurang Mehta, Karan Vahi, Philip J. Maechling
Enabling large-scale scientific workflows on petascale resources using MPI master/worker. 49:1-49:8 - Ian T. Foster, Rajkumar Kettimuthu, Stuart Martin, Steven Tuecke
Campus bridging made easy via Globus services. 50:1-50:8
Education, outreach and training track
- Steven I. Gordon
Computational science certificates for the current workforce: lessons learned. 51:1-51:4 - Rubin H. Landau, Manuel J. Paez, Cristian C. Bordeianu:
A blended, multimodal access eTextBook in computational physics. 52:1-52:7 - David L. Hart
Longitudinal user and usage patterns in the XSEDE user community. 53:1-53:7 - Bina Ramamurthy, Jessica Poulin, Katharina Dittmar:
Cloud-enabling biological simulations for scalable and sustainable access: an experience report. 54:1-54:2 - Kristy A. Kallback-Rose, Kurt Seiffert, Danko Antolovic, Therese Miller, Robert Ping, Craig Stewart:
Conducting K-12 outreach to evoke early interest in IT, science, and advanced technology. 55:1-55:8 - Patricia Jacobs:
Computing MATTERS: building pathways to cyberinfrastructure. 56:1-56:4 - David R. Mattson, R. Jay Mashl, Edee Norman Wiziecki:
Enhancing chemistry teaching and learning through cyberinfrastructure. 57:1-57:5 - Michael J. Boyles, Albert M. William, Chauncey Frend, Chris Eller:
Using stereoscopic 3D videos to inform the public about the benefits of computational science. 58:1-58:8 - Venkatesh Merwade
WaterHUB: a resource for students and educators for learning hydrology. 59:1-59:4 - Subrata Bhattacharjee, Christopher Paolini, Mahesh Kumar:
A learning outcome driven cyber infrastructure for thermodynamics education. 60:1-60:8 - Jerome E. Mitchell, Judy Qiu, Massimo Canonio, Shantenu Jha
FutureGrid education: using case studies to develop a curriculum for communicating parallel and distributed computing concepts. 61:1-61:5 - Lizanne DeStefano, Lorna Rivera:
The initial role of evaluation in a large-scale multi-site project. 62:1-62:7 - M. Farrukh Khan, Daniel Vrinceanu
Minority student involvement in computational science research at Texas Southern University. 63:1-63:4 - Diane A. Baxter, Beth Simon:
Building a partnership for computer science education. 64:1-64:5 - Jim Basney, Randy Butler, Dan Fraser, Suresh Marru, Craig Stewart:
Security for science gateways and campus bridging: XSEDE12 panel. 65:1 - Ian T. Foster, Vas Vasiliadis:
SaaS for science: the path to reality for research in the cloud. 66:1 - Richard Knepper, Guy Almes, Thorbjörn Axelsson, Paul Muzio, Joel Zysman:
Campus bridging pilot project reports: XSEDE12 panel. 67:1 - Beth Plale
Managing the long tail of science: data and communities. 68:1-68:2
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