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ICBO 2015: Lisbon, Portugal
- Francisco M. Couto, Janna Hastings:
Proceedings of the International Conference on Biomedical Ontology, ICBO 2015, Lisbon, Portugal, July 27-30, 2015. CEUR Workshop Proceedings 1515, CEUR-WS.org 2015
Regular Papers
- Martin Boeker, Fábio França, Peter Bronsert, Stefan Schulz:
TNM-O an ontology for the Tumor-Node-Metastasis classification of malignant tumors: a study on rectal cancer. - Werner Ceusters, William R. Hogan:
An ontological analysis of diagnostic assertions in electronic healthcare records. - Patryk Burek, Frank Loebe, Heinrich Herre:
A UML profile for functional modeling applied to the Molecular Function Ontology. - Mário J. Silva, Tiago Chaves, Bárbara Simões:
An ontology-based approach for SNOMED CT translation. - Adrien Barton, Régis Duvauferrier, Anita Burgun:
Formalization of indicators of diagnostic performance in a realist ontology. - Edward Cheetham, Yongsheng Gao, Bruce Goldberg, Robert R. Hausam, Stefan Schulz:
Formal representation of disorder associations in SNOMED CT. - Pablo López-García, Stefan Schulz:
Can SNOMED CT be squeezed without losing its shape? - Ahmad C. Bukhari, Mate Levente Nagy, Michael Krauthammer, Paolo Ciccarese, Christopher J. O. Baker:
BIM: an open ontology for the annotation of biomedical images. - Maulik R. Kamdar, Tania Tudorache, Mark A. Musen:
Investigating term reuse and overlap in biomedical ontologies. - Barry Smith, Werner Ceusters:
Aboutness: towards foundations for the Information Artifact Ontology. - William Smith, Alan R. Chappell, Courtney D. Corley:
Medical and transmission vector vocabulary alignment with Schema.org. - Jennifer D. Warrender, Phillip Lord:
Scaffolding the mitochondrial Disease Ontology from extant knowledge sources. - Manuel Quesada-Martínez, Astrid Duque-Ramos, Jesualdo Tomás Fernández-Breis:
Analysis of the evolution of ontologies using OQuaRE: application to EDAM. - Rafael S. Gonçalves, Samson W. Tu, Csongor I. Nyulas, Michael J. Tierney, Mark A. Musen:
Structured data acquisition with ontology-based web forms. - Luke T. Slater, Georgios V. Gkoutos, Paul N. Schofield, Robert Hoehndorf:
Using Aber-OWL for fast and scalable reasoning over BioPortal ontologies. - Kouji Kozaki, Yuki Yamagata, Riichiro Mizoguchi, Takeshi Imai, Kazuhiko Ohe:
Disease Compass - a navigation system for disease knowledge based on ontology and linked data techniques.
Early Career Papers
- Andre Lamurias, Vasco Pedro, Luka A. Clarke, Francisco M. Couto:
Annotating biomedical ontology terms in electronic health records using crowd-sourcing. - Jonathan P. Bona, Werner Ceusters:
Replacing EHR structured data with explicit representations. - Daniela Oliveira, Catia Pesquita:
Compound matching of biomedical ontologies. - Catarina Martins, Ernesto Jiménez-Ruiz, Emanuel Santos, Catia Pesquita:
Towards visualizing the mapping incoherences in Bioportal. - Jonathan P. Bona, Gunther Kohn, Alan Ruttenberg:
Ontology-driven patient history questionnaires.
Poster abstracts
- Lucy Lu Wang, Yong Choi:
Development of a discharge ontology to support postanesthesia discharge decision making. - Marta Costa, David Osumi-Sutherland, Steven J. Marygold, Nick Brown:
Improvements to the Drosophila anatomy ontology. - Yongqun He, Jie Zheng, Yu Lin:
Ontoanimal tools for reusing ontologies, generating and editing ontology terms, and dereferencing ontology terms. - Yongqun He, Guoqian Jiang:
Bridging Vaccine Ontology and NCIt vaccine domain for cancer vaccine data integration and analysis. - Elvira Mitraka, Lynn M. Schriml:
2015 Disease Ontology update: DO's expanded curation activities to connect disease-related data. - Olga L. Giraldo, Alexander García Castro, Óscar Corcho:
Using Semantics and NLP in the SMART Protocols Repository. - Janna Hastings, Neil Swainston, Venkatesh Muthukrishnan, Namrata Kale, Adriano Dekker, Gareth I. Owen, Steve Turner, Pedro Mendes, Christoph Steinbeck:
ChEBI for systems biology and metabolic modelling. - Selja Seppälä:
Mapping WordNet to the Basic Formal Ontology using the KYOTO ontology. - Pance Panov, Larisa N. Soldatova, Saso Dzeroski:
Representing bioinformatics datatypes using the OntoDT ontology. - Catarina Martins, Daniel Faria, Catia Pesquita:
Visualization and editing of biomedical ontology alignments in AgreementMakerLight. - Daniela Oliveira, Catia Pesquita:
Inferring logical definitions using compound ontology matching. - Csongor I. Nyulas, Samson W. Tu, Tania Tudorache, Mark A. Musen:
Modeling and tools for supporting post-coordination in ICD-11. - Olga Krebs, Katy Wolstencroft, Natalie J. Stanford, Norman Morrison, Martin Golebiewski, Stuart Owen, Quyen Nguyen, Jacky L. Snoep, Wolfgang Müller, Carole A. Goble:
FAIRDOM approach for semantic interoperability of systems biology data and models. - Anahita Nafissi
, Fabio Fiorani, Björn Usadel:
Mapping a database schema to the structure of an existing ontology.
Demonstrations abstracts
- Edison Ong, Yongqun He:
GOfox: Semantics-based simplified hierarchical classification and interactive visualization to support GO enrichment analysis. - Yongqun He, Jie Zheng, Yu Lin:
Ontorat: Automatic generation and editing of ontology terms. - Ahmad Alobaid, Daniel Garijo, María Poveda-Villalón, Idafen Santana-Pérez, Óscar Corcho:
OnToology, a tool for collaborative development of ontologies. - Luke T. Slater, Georgios V. Gkoutos, Paul N. Schofield, Robert Hoehndorf:
AberOWL: an ontology portal with OWL EL reasoning. - James A. Overton:
EDN-LD: A simple linked data tool. - James A. Overton, Heiko Dietze, Shahim Essaid, David Osumi-Sutherland, Christopher J. Mungall:
ROBOT: A command-line tool for ontology development. - Phillip Lord, Jennifer D. Warrender:
Highly literate ontologies. - Ray W. Fergerson, Paul R. Alexander, Michael Dorf, Rafael S. Gonçalves, Manuel Salvadores, Alex Skrenchuk, Jennifer Vendetti, Mark A. Musen:
NCBO BioPortal version 4. - Rafael S. Gonçalves, Csongor I. Nyulas, Samson W. Tu, Mark A. Musen:
OWL-based form generation and structured data acquisition.
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