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IWBBIO 2022: Maspalomas, Gran Canaria, Spain - Part II
- Ignacio Rojas
, Olga Valenzuela
Bioinformatics and Biomedical Engineering - 9th International Work-Conference, IWBBIO 2022, Maspalomas, Gran Canaria, Spain, June 27-30, 2022, Proceedings, Part II. Lecture Notes in Computer Science 13347, Springer 2022, ISBN 978-3-031-07801-9
Chip-Seq and RNA-Seq Analysis
- Sahar Qazi
Integrative Analysis of Ovarian Serious Adenocarcinoma to Understand Disease Network Biology. 3-17 - Lorenzo Martini
GAGAM: A Genomic Annotation-Based Enrichment of scATAC-seq Data for Gene Activity Matrix. 18-32 - Anna Mrukwa
Finding Significantly Enriched Cells in Single-Cell RNA Sequencing by Single-Sample Approaches. 33-44 - Karel Sedlár
Comparison of Stranded and Non-stranded RNA-Seq in Predicting Small RNAs in a Non-model Bacterium. 45-56 - Felitsiya Shakola, Dean Palejev
Comparative Study of Synthetic Bulk RNA-Seq Generators. 57-70 - Hanna Slowik, Joanna Zyla
Investigating Sources of Zeros in 10× Single-Cell RNAseq Data. 71-80
Bioinformatics and Biomarker Identification
- S. Patsiris, Themis P. Exarchos, Panayiotis M. Vlamos:
Exhaled Breath Condensate Study for Biomarkers Discovery. 83-89 - Iván Petrini, Rocío L. Cecchini
Statistical Learning Analysis of Thyroid Cancer Microarray Data. 90-102 - Manuel Costanzo
Migrating CUDA to oneAPI: A Smith-Waterman Case Study. 103-116
Computational Proteomics
- Anna Glodek:
Fuzzy-Inference System for Isotopic Envelope Identification in Mass Spectrometry Imaging Data. 119-132 - Julie Ledoux
Receptor Tyrosine Kinase KIT: A New Look for an Old Receptor. 133-137 - Julie Ledoux
Human Vitamin K Epoxide Reductase as a Target of Its Redox Protein. 138-141 - Douglas Soares Gonçalves, Antonio Mucherino:
A Distance Geometry Procedure Using the Levenberg-Marquardt Algorithm and with Applications in Biology but Not only. 142-152 - Akrem Sellami
A Semi-supervised Graph Deep Neural Network for Automatic Protein Function Annotation. 153-166
Computational Systems for Modelling Biological Processes
- Yana Nedorez
Strong Prevalence of the Function over Taxonomy in Human tRNA Genes. 169-178 - Leonardo Giannantoni
A Methodology for Co-simulation-Based Optimization of Biofabrication Protocols. 179-192 - Richard Oliver Matzko, Laurentiu Mierla, Savas Konur:
A 3D Multicellular Simulation Layer for the Synthetic Biology CAD Infobiotics Workbench Suite. 193-207 - Alessandro Mariotti, Emanuele Gasparotti, Emanuele Vignali, Pietro Marchese, Simona Celi, Maria-Vittoria Salvetti:
Integrating in-vivo Data in CFD Simulations and in in-vitro Experiments of the Hemodynamic in Healthy and Pathologic Thoracic Aorta. 208-219 - Alzbeta Bohiniková
Sensitivity Analysis of Adhesion in Computational Model of Elastic Doublet. 220-233 - Savíns Puertas-Martín
Increasing the Accuracy of Optipharm's Virtual Screening Predictions by Implementing Molecular Flexibility. 234-245
Feature Selection, Extraction, and Data Mining in Bioinformatics: Approaches, Methods and Adaptations
- Jean Davidson, Grif Hawblitzel, McClain Kressman
Comparisons of Knowledge Graphs and Entity Extraction in Breast Cancer Subtyping Biomedical Text Analysis. 249-259 - José Diogo Marques dos Santos
Towards XAI: Interpretable Shallow Neural Network Used to Model HCP's fMRI Motor Paradigm Data. 260-274 - Mario A. Gutierrez-Mondragon, Caroline König, Alfredo Vellido:
A Deep Learning-Based Method for Uncovering GPCR Ligand-Induced Conformational States Using Interpretability Techniques. 275-287 - Vojtech Barton
Data Transformation for Clustering Utilization for Feature Detection in Mass Spectrometry. 288-299 - Christophe Guyeux, Guislaine Refregier, Christophe Sola
Spolmap: An Enriched Visualization of CRISPR Diversity. 300-308 - Joanna Tobiasz
How to Compare Various Clustering Outcomes? Metrices to Investigate Breast Cancer Patient Subpopulations Based on Proteomic Profiles. 309-318 - Michal Dobrovolny, Jakub Benes, Ondrej Krejcar, Ali Selamat:
Sperm-cell Detection Using YOLOv5 Architecture. 319-330
Machine Learning in Bioinformatics
- Akram Vasighizaker
Comparative Analysis of Supervised Cell Type Detection in Single-Cell RNA-seq Data. 333-345 - Dani Livne, Sol Efroni
PathWeigh - Quantifying the Behavior of Biochemical Pathway Cascades. 346-352 - Carlos Vega
Translational Challenges of Biomedical Machine Learning Solutions in Clinical and Laboratory Settings. 353-358 - Álvaro Torres-Martos
Human Multi-omics Data Pre-processing for Predictive Purposes Using Machine Learning: A Case Study in Childhood Obesity. 359-374 - Ricardo Javier Fuentes-Fino, Saúl Calderón Ramírez
Feature Density as an Uncertainty Estimator Method in the Binary Classification Mammography Images Task for a Supervised Deep Learning Model. 375-388 - Olga Georgieva:
Iterative Clustering for Differential Gene Expression Analysis. 389-398 - Aleksandra Suwalska
Comparison of Batch Effect Removal Methods for High Dimensional Mass Cytometry Data. 399-410
Next Generation Sequencing and Sequence Analysis
- Shrikant D. Pawar, Karuna Mittal, Chandrajit Lahiri:
Evaluating Performance of Regression and Classification Models Using Known Lung Carcinomas Prognostic Markers. 413-418 - Luca Renders
Approximate Pattern Matching Using Search Schemes and In-Text Verification. 419-435 - Paola Bonizzoni
KFinger: Capturing Overlaps Between Long Reads by Using Lyndon Fingerprints. 436-449 - Justyna Mika
Can We Detect T Cell Receptors from Long-Read RNA-Seq Data? 450-463
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