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18th BIBE 2018: Taichung, Taiwan
- 18th IEEE International Conference on Bioinformatics and Bioengineering, BIBE 2018, Taichung, Taiwan, October 29-31, 2018. IEEE 2018, ISBN 978-1-5386-6217-5
Session 1.1: Biological Sequence Analysis
- Osamu Maruyama, Fumiko Matsuzaki
:
DegSampler: Collapsed Gibbs Sampler for Detecting E3 Binding Sites. 1-9 - Jing-Doo Wang, Yi-Chun Wang:
Constructing the Relationship Tree of All Viruses via Whole Genomic Sequences. 10-13 - His-Chung Kung, Rong-Ming Chen, Jeffrey J. P. Tsai, Rouh-Mei Hu:
Stratification of Human Gut Microiome and Building a SVM-Based Classifier. 14-17 - Sanjay S. Bankapur
Protein Secondary Structural Class Prediction Using Effective Feature Modeling and Machine Learning Techniques. 18-21
Session 1.2: Biomedical Concepts and Measurements
- Emma D. Wilson
Model Predictive and Proportional Integral Control of Blood Clotting Speed Using Warfarin when Data are Missing. 22-27 - Emma D. Wilson
Stochastic Non-minimal State Space Control with Application to Automated Drug Delivery. 28-34 - Indriani Puspitasari Astono, James S. Welsh
Adjacent Network for Semantic Segmentation of Liver CT Scans. 35-40 - Ana Nunes
Texture Biomarkers of Alzheimer's Disease and Disease Progression in the Mouse Retina. 41-46
Session 1.3: Sequence Alignment and High-Performance Sequence Analysis
- Jaspal Singh, Ramchalam Kinattinkara Ramakrishnan, Mathieu Blanchette:
Detection of Errors in Multi-genome Alignments Using Machine Learning Approaches. 47-53 - Ying-Feng Hsu, Morito Matsuoka, Nicolas Jung, Yuki Matsumoto, Daisuke Motooka, Shota Nakamura
A High-Performance Sequence Analysis Engine for Shotgun Metagenomics through GPU Acceleration. 54-60 - Ramchalam Kinattinkara Ramakrishnan, Jaspal Singh, Mathieu Blanchette:
RLALIGN: A Reinforcement Learning Approach for Multiple Sequence Alignment. 61-66 - Shanshan Ren, Nauman Ahmed, Koen Bertels, Zaid Al-Ars:
An Efficient GPU-Based de Bruijn Graph Construction Algorithm for Micro-Assembly. 67-72
Session 1.4: Recent Advancement in Medical Engineering
- Gamal Abdel Nasser, Ahmed M. R. Fath El-Bab
Low Cost Micro-Droplet Formation Chip with a Hand-Operated Suction Syringe. 73-78 - Marlene Bustamante
A Parametric 3D-Printed Body-Powered Hand Prosthesis Based on the Four-Bar Linkage Mechanism. 79-85 - Ryeonho Kang, Ho Seon Choi, Yoon Su Baek:
Design of a Portable Radial Piston Pneumatic Compressor for Wearable Robot System. 86-89 - Wen-Cheng Lai
SAR ADC with DAC and SC Low-Pass Filter for Positron Emission Tomography Application. 90-93 - Xueping Li, Yuan Yu, Ningmei Yu:
Study on the Channel Characteristics of Auxiliary Medical Devices Based on MDAPSK Technology. 94-97
Session 1.5: Biological Network Inference and Analysis I
- Shuhei Kimura, Masato Tokuhisa, Mariko Okada-Hatakeyama:
Inference of Genetic Networks Using Random Forests: Use of Different Weights for Time-Series and Static Gene Expression Data. 98-103 - Suneetha Uppu, Aneesh Krishna:
An Intensive Search for Higher-Order Gene-Gene Interactions by Improving Deep Learning Model. 104-109 - Seunghyun Park, You Jin Kim, Jeong-Whun Kim, Jin Joo Park, Borim Ryu
Interpretable Prediction of Vascular Diseases from Electronic Health Records via Deep Attention Networks. 110-117 - Hau Cherng Wong, Christine Siew Ken Lee, Dong-Ling Tong:
Pathway Analysis of Marker Genes for Leukemia Cancer using Enhanced Genetic Algorithm-Neural Network (enGANN). 118-121 - Mst. Shamima Khatun, Md. Mehedi Hasan
SIPMA: A Systematic Identification of Protein-Protein Interactions in Zea mays Using Autocorrelation Features in a Machine-Learning Framework. 122-125
Session 1.6: Medical and Physiological Signal Analysis I
- Armin Grünewald, David Kroenert, Jonas Poehler, Rainer Brück, Frédéric Li
Biomedical Data Acquisition and Processing to Recognize Emotions for Affective Learning. 126-132 - (Withdrawn) KnowPain: Automated System for Detecting Pain in Neonates from Videos. 133-138
- Spyridon Manganas, Nikolaos G. Bourbakis, Konstantinos Michalopoulos:
Brain Structural and Functional Representation Based on the Local Global Graph Methodology. 139-142 - Peixi Li, Yannick Benezeth, Keisuke Nakamura, Randy Gomez, Chao Li, Fan Yang:
Comparison of Region of Interest Segmentation Methods for Video-Based Heart Rate Measurements. 143-146
Session 1.7: Workshop: Cancer Bioinformatics and Intelligent Medicine
- Chun-Yu Lin
Deep Learning with Evolutionary and Genomic Profiles for Identifying Cancer Subtypes. 147-150 - Teppei Matsubara, Tomoshiro Ochiai, Morihiro Hayashida, Tatsuya Akutsu
Convolutional Neural Network Approach to Lung Cancer Classification Integrating Protein Interaction Network and Gene Expression Profiles. 151-154 - Jung-Yu Lee, Si-Yu Lin, Yi-Hsuan Chuang, Sing-Han Huang, Yu-Yao Tseng, Chun-Yu Lin
Identification of the PCa28 Gene Signature as a Predictor in Prostate Cancer. 155-158 - Yoshiaki Sota
Detection of Fusion Genes from Human Breast Cancer Cell-Line RNA-Seq Data Using Shifted Short Read Clustering. 159-162
Session 1.8: Biological Sensor and Data Analysis
- Martin Strauch, Latha Mukunda, Alja Lüdke, C. Giovanni Galizia, Dorit Merhof:
Recovering a Chemotopic Feature Space from a Group of Fruit Fly Antenna Chemosensors. 163-169 - Renato Mio
Mechanical Testing Methods for Body-Powered Upper-Limb Prostheses: A Review. 170-176 - Maryam Butt
Investigating Electrode Sites for Intention Detection During Robot Based Hand Movement Using EEG-BCI System. 177-180 - Kenshi Saho
Remote Assessment of Gait Deterioration Due to Memory Impairment in Elderly Adults Using Micro-Doppler Radar. 181-184 - Ho Seon Choi, Myounghoon Shim, Chang Hee Lee, Yoon Su Baek:
Estimating GRF(Ground Reaction Force) and Calibrating CoP(Center of Pressure) of an Insole Measured by an Low-Cost Sensor with Neural Network. 185-188
Session 2.1: Cancer Bioinformatics
- Padmaja Jonnalagedda, Daniel Schmolze
MVPNets: Multi-viewing Path Deep Learning Neural Networks for Magnification Invariant Diagnosis in Breast Cancer. 189-194 - Y-h. Taguchi
Tensor Decomposition-Based Unsupervised Feature Extraction for Integrated Analysis of TCGA Data on MicroRNA Expression and Promoter Methylation of Genes in Ovarian Cancer. 195-200 - Leonila Lagunes, Charles H. Lee:
Cancer Screening Using Biomimetic Pattern Recognition with Hyper-Dimensional Structures. 201-206
Session 2.2: Medical Image and Signal Analysis I
- Yuta Furudate, Nanami Onuki, Kaori Chiba, Yuji Ishida, Sadayoshi Mikami:
Automated Evaluation of Hand Motor Function Recovery by Using Finger Pressure Sensing Device for Home Rehabilitation. 207-214 - Chunmei Shi, Junjie Wang, Lingling Zhao, Xiaohong Su, Guangshun Jiang
The Delta Generalized Labeled Multi-Bernoulli Filter for Cell Tracking. 215-220 - Zhiyu Chen, Junchao Wang, Kaining Han, Zeljko Zilic:
Software Defined Radio-Based Testbed for Wireless Body Area Network. 221-224 - Nan Lyu, LiKang Xu, Ningmei Yu, He Jiu Zhang:
Nonlinear CMOS Image Sensor with SOC Integrated Local Contrast Stretch for Bio-Microfluidic Imaging. 225-228
Session 2.3 Tutorial: Assistive Research Biotechnologies for People in Need
Session 2.4: Medical Signal, Sequence Detection, DNA Barcode
- Cheng-Hong Yang, Kuo-Chuan Wu, Hsueh-Wei Chang, Li-Yeh Chuang:
Decision Theory-Based DNA Barcoding Through Quick Response Code Representation. 229-234 - (Withdrawn) Species Identification Using Partial DNA Sequence: A Machine Learning Approach. 235-242
- Ernst Joachim Houtgast, Vlad Mihai Sima, Koen Bertels, Zaid Al-Ars:
Comparative Analysis of System-Level Acceleration Techniques in Bioinformatics: A Case Study of Accelerating the Smith-Waterman Algorithm for BWA-MEM. 243-246 - Hiroaki Yoshikawa, Hiroshi Hagiwara:
Psycho-Physiological Changes Depend on Differences in the Presentation Ratio of Non-target Stimuli. 247-250 - Ming-Yi Yen, Hsueh-Ting Chu, Yu-Ching Chen, Jeffrey J. P. Tsai:
Quantitative Analysis of ECI2 Expression from RNA-Seq for Breast Cancer Gene Signatures. 251-254 - Salah Hamdi, Asma Ben Abdallah, Mohamed Hedi Bedoui:
Novel Parameters for ECG Signal Analysis Irrespective of Patient's Age, Sex and Heart Rate. 255-258 - Li-Yeh Chuang, Cheng-Hong Yang, Yu-Da Lin
Improved Multifactor Dimensionality Reduction for Epistasis Detection. 259-262
Session 2.5: Cancer and Medical Bioinformatics
- Eskezeia Yihunie Dessie, Ezra B. Wijaya, Chien-Hung Huang, David Agustriawan
Identification of Several Core Overexpressed MicroRNAs that Could Predict Survival in Patients with Ovarian Cancer. 263-268 - Yasmeen Naz Panhwar, Fazel Naghdy, David Stirling, Golshah Naghdy, Janette Potter:
Quantitative Frailty Assessment Using Activity of Daily Living (ADL). 269-272 - Jia-Hua Cai, Yu-Ching Chen, Hsueh-Ting Chu, Jeffrey J. P. Tsai:
Identification of Potential Long Non-coding RNA Biomarkers for Breast Cancer Patients with Somatic BRCA1 Mutations from RNA-Seq Datasets. 273-276 - Jhih-Ying Chen, Chia-Min Chen, Pei-Chun Chang, Jeffrey J. P. Tsai:
The Potential Dual-Target Inhibitors for HER2/HSP90 Proteins from Traditional Chinese Medicine. 277-282 - Juncheng Ding, Wei Jin, Haihua Chen
Regression-Based Documents Reranking for Precision Medicine. 283-286
Session 2.6: Medical Image and Signal Analysis II
- Alexandre Krebs, Vania Camilo, Eliette Touati, Yannick Benezeth, Valerie Michel, Gregory Jouvion, Fan Yang, Dominique Lamarque, Franck Marzani:
Detection of H. pylori Induced Gastric Inflammation by Diffuse Reflectance Analysis. 287-292 - Enkhbat Batbayar, Enkhbaatar Tumenjargal, Chulgyu Song, Woonchul Ham:
Implementation of an Ultrasound Platform for Proposed Photoacoustic Image Reconstruction Algorithm. 293-298 - Yuan-Hsiang Chang, Hideo Yokota, Kuniya Abe, Ming-Dar Tsai:
Three-Dimensional Segmentation of Mouse Embryonic Stem Cell Nuclei for Quantitative Analysis of Differentiation Activity Using Time-Lapse Fluorescence Microscopy Images. 299-304 - Youshan Zhang:
Corticospinal Tract (CST) Reconstruction Based on Fiber Orientation Distributions (FODs) Tractography. 305-310 - Takuya Sasabe, Hiroshi Hagiwara:
Using NIRS to Detect Brain oxyHb Changes During Short-Term Memory Tasks. 311-314
Session 3.1: Special Paper Session - Biomedical Big Data
- Ting-Yuan Liu, Chien-Chin Lee, Hsi-Yuan Huang, Jan-Gowth Chang:
Mutation Analysis of Second Primary Tumors in the Head and Neck Cancer by Next Generation Sequencing. 315-318 - Chien-Chih Lee, Wen-Hsin Chang, Ting-Yuan Liu, Yu-Chia Chen, Guan-Yu Chen, Yang-Chang Wu, Jan-Gowth Chang:
The Amiloride Derivatives Regulate the Alternative Splicing of Apoptotic Gene Transcripts. 319-322 - Yu-Chia Chen, Chien-Chih Chiu, Han-Lin Chou, Jan-Gowth Chang:
The Role of mRNA Transporter in Human Cancer. 323-326
Session 3.2: Biological Text Mining and Biomedical Informatics
- Elizabeth Tobing, Ashraf Murtaza
EP-CapsNet: Extending Capsule Network with Inception Module for Electrophoresis Binary Classification. 327-333 - Khang Trinh, Duy Pham, Ly Le:
Semantic Relation Extraction for Herb-Drug Interactions from the Biomedical Literature Using an Unsupervised Learning Approach. 334-337 - Khai Nguyen, Ryutaro Ichise:
Learning Effective Distributed Representation of Complex Biomedical Concepts. 338-343
Session 3.3: Biological Network Inference and Analysis II
- Dong Ling Tong, Christine Siew Ken Lee:
A Systems Biology Approach to Model Gene-Gene Interaction for Childhood Sarcomas. 344-347 - Shaikh Farhad Hossain, Sony Hartono Wijaya
Prediction of Plant-Disease Relations Based on Unani Formulas by Network Analysis. 348-351 - Charles C. N. Wang, Pei-Chun Chang, Phillip C.-Y. Sheu
Computational Modeling of the Early Development of Embryonic Leaves in Maize. 352-355 - Md. Mehedi Hasan
iLMS, Computational Identification of Lysine-Malonylation Sites by Combining Multiple Sequence Features. 356-359
Session 3.4 Computational Modeling and Sensor in Biomedical Engineering
- Olzhas Mukhmetov, Dastan Igali, Yong Zhao, Sai Cheong Fok
Finite Element Modelling for the Detection of Breast Tumor. 360-363 - Tanu Khanuja, Harikrishnan N. Unni:
Computational Modeling of Traumatic Brain Injury Due to Impact on Different Sides of Human Head. 364-370 - Wen-Cheng Lai
Sigma-Delta ADC for Image Sensor in Virtual and Augmented Reality Camera to Medical Training. 371-374
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